ggKbase home page

scnpilot_p_inoc_scaffold_12110_curated_5

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(3594..3893)

Top 3 Functional Annotations

Value Algorithm Source
Cold-shock DNA-binding protein family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDR8_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 87.8
  • Coverage: 98.0
  • Bit_score: 170
  • Evalue 7.10e-40
CspA family cold shock protein {ECO:0000313|EMBL:KHS48037.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.9
  • Coverage: 99.0
  • Bit_score: 174
  • Evalue 6.90e-41
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 85.7
  • Coverage: 98.0
  • Bit_score: 168
  • Evalue 8.50e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium subterraneum → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 300
TCCGCAGCCGATCTTCAGGTCGTTGGCGATGTGATCCCGGTCGAGCAGCGCGCTCCGGCTGCGCCGCAGCGTCAGCGCACTGGCGAGAAGGCCACCGGCACGGTGAAGTTCTTCAACTCCATGAAGGGCTTCGGCTTCATCACGCGTGACGATGGCGAGCCCGATGCGTTCGTGCATATCAGCGCAGTGGAACGGTCTGGCCTGTCGCAGCTCAACGAAGGCGACAAGCTGGAATTCGAACTCGAAGTCGATCGACGAGGCAAGTACTCGGCGGTCAACCTTGTGCCCGTTCAGGGCTGA
PROTEIN sequence
Length: 100
SAADLQVVGDVIPVEQRAPAAPQRQRTGEKATGTVKFFNSMKGFGFITRDDGEPDAFVHISAVERSGLSQLNEGDKLEFELEVDRRGKYSAVNLVPVQG*