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SCNpilot_cont_300_bf_scaffold_266_curated_4

Organism: scnpilot_dereplicated_Sphingomonas_2

near complete RP 51 / 55 BSCG 51 / 51 ASCG 11 / 38 MC: 1
Location: comp(3690..4202)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A6T3_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 69.2
  • Coverage: 172.0
  • Bit_score: 232
  • Evalue 3.40e-58
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AJP71264.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.5
  • Coverage: 163.0
  • Bit_score: 250
  • Evalue 2.20e-63
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 55.9
  • Coverage: 170.0
  • Bit_score: 189
  • Evalue 7.90e-46

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Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 513
ATGGATTCGTCCTCGCAGACCGGCGGGTTGCAACGCGTGTTGGAAAATGAGCGGCCGCGGCTGCTCCGCTTCCTTGCGGCTCGCGGCGCGGGCGACGATGCGGAGGACGTGCTGCAGGACCTGTGGCACAAGATCTCCGGGGTCGAGGCGCGACCGGTCGCCGATCCGGTCTCCTATCTCTTCCGTGCCGCCGAGAATGTGCTGCGCGATCGCCAGCGCGCCTCGCTCAGCCGGGATCGGCGCCAGCATGAATGGCACGACCTCGCCGGGAGCGACGACGCTCCCCAGGGCGAGCGGGTGCTGATCGCGCGCGAGCGGCTGCGCGAGGCCGAGGCGACGCTGCTTGCGCTCGGGCCGCGAGTCGATCAGATTTTCCGTCGCTACCGGCTGGATGGGCTCGGCCAGGCAGCGATCGCTCGGGAATTGGGGATAAGCTTGAGCTCGGTGGAGAAGGATCTGCAAAAGGCATATCGCGCCCTTGCGCAACTCAAGGACAAATTCGATGCGGAATGA
PROTEIN sequence
Length: 171
MDSSSQTGGLQRVLENERPRLLRFLAARGAGDDAEDVLQDLWHKISGVEARPVADPVSYLFRAAENVLRDRQRASLSRDRRQHEWHDLAGSDDAPQGERVLIARERLREAEATLLALGPRVDQIFRRYRLDGLGQAAIARELGISLSSVEKDLQKAYRALAQLKDKFDAE*