ggKbase home page

SCNpilot_cont_300_bf_scaffold_101_curated_187

Organism: scnpilot_dereplicated_Spirosoma_1

near complete RP 53 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38 MC: 1
Location: comp(183422..184045)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Spirosoma panaciterrae RepID=UPI00036C4275 similarity UNIREF
DB: UNIREF100
  • Identity: 93.2
  • Coverage: 207.0
  • Bit_score: 391
  • Evalue 6.90e-106
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 84.0
  • Coverage: 206.0
  • Bit_score: 349
  • Evalue 5.60e-94
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB41646.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.0
  • Coverage: 206.0
  • Bit_score: 349
  • Evalue 2.50e-93

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Spirosoma linguale → Spirosoma → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 624
ATGCTCCGACTTATACCGTTTTTTACGACTGAAGCGCAGTTAGTAGCTGCCTTAAAGCGTGGGGAAAGCCGCGCCCACAAGGTCGTATATGAGCGGTATGCCGGTAAAATGCTAGCCGTATGTACACGCTATTGTGCCAACCGGGACGATGCCGAAGAAGTCATGATCGATGGGTTTATGCGCGTGTTTGAGAAAATTGAGCAGTTTCGGGAGGATGGGAGCTTTGAGGGTTGGATCCGGCGGGTAATGGTAACGGAATCGCTGATGTTTTTGCGGAAAAATAAGCAATGGCGTCAGGAAGTATCTATCGACGACGTTACTGTTGAACCAGACTACGCATGGGCCGATACTGCCGTTAATGAAAATGATTTATTACGAATGGTGAATCAATTACCCGACGGCTATCGTACAGTTTTTAACCTGTATGCTATCGAAGGATATAGTCATGCCGAAATTGCCGAAATGCTAGGTATTTCGGAAGGGACATCGAAATCGCAGTTGAGTCGGGCAAGAATGCTGTTGCAGGCGAATATAAAGAAATTAGAACAGGACTCCGCTCAGGGTAAATGGGCTGGGCAACGTGAATATTATGAAAAATCAGTCGGAAAAGCAGCCAATCGATGA
PROTEIN sequence
Length: 208
MLRLIPFFTTEAQLVAALKRGESRAHKVVYERYAGKMLAVCTRYCANRDDAEEVMIDGFMRVFEKIEQFREDGSFEGWIRRVMVTESLMFLRKNKQWRQEVSIDDVTVEPDYAWADTAVNENDLLRMVNQLPDGYRTVFNLYAIEGYSHAEIAEMLGISEGTSKSQLSRARMLLQANIKKLEQDSAQGKWAGQREYYEKSVGKAANR*