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SCNpilot_cont_300_bf_scaffold_250_curated_3

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(2273..3043)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-70 n=1 Tax=Variovorax paradoxus RepID=UPI000371C17B similarity UNIREF
DB: UNIREF100
  • Identity: 87.9
  • Coverage: 256.0
  • Bit_score: 431
  • Evalue 4.40e-118
anti-sigma k factor rska similarity KEGG
DB: KEGG
  • Identity: 86.7
  • Coverage: 256.0
  • Bit_score: 428
  • Evalue 2.00e-117
Anti-sigma K factor RskA {ECO:0000313|EMBL:ADU35700.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.7
  • Coverage: 256.0
  • Bit_score: 428
  • Evalue 8.90e-117

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 771
ATGAATCTCATCGCACATCCCGAACTGCTCGAGCTGCTGGCCGCGAGCCATGCCCTGGGCACCCTGCGCGGCGGCGCCCGCCGCCGCTTCGAGGCCCTGGCCCGCGAGCAGGCGCCGGTGCGCGCCGCGGCGCTGGTCTGGCAGGGCCGGCTCGCCAGCATGACCGAGCTGCAGCCCTCCATCACGCCCGACCCCGCCGTGTGGACCCGCATCCGCAACATGATCGACGCCGAGCAGAGCAAGCTCGCCATCGAGCGCCAGCGCGACGCGGCCAACGCGCGCGCCGCCGACAAGGCACAGCAGCCGCAACAAGGCGGCTGGCTGCGCAGCCTCGCGCTCTGGCGCGGCGCCACGGCCGCCGGCGCGCTGGCCACGGTGCTGGCCGTGACGATCGGCCTCAACCTGCGCGACCAGTTGCACAACGCTCCGGCGGTGCAATACGTGGCCGTGCTGAGCGACGACAAGGACGCGGCCTCGATGCTCGTGACCTTCGATCCCAAGAAGAAGCAGCTCGTGCTGCAGCGGGTGGGCGGCTTCAGCGAAGGCGACGACAAGTCGCTGCAGCTCTGGGCCCTGCCGCCGGGCGGCGCACCGCGCTCGCTGGGCGTGCTCGACAATGCGCCGGGCCTGCGGCTGGCGGCGTCGGAGTCCGACGTGCATGCCGTGCCTGCACTGGCCATCTCGCTCGAGGCCAAGGGCGGCGTGCCGGCGGGCAGCGGTCCGAAGGGCCCGATCCTGTTCAAGGGCGCGCTGATCGAGAAAACCATCTAG
PROTEIN sequence
Length: 257
MNLIAHPELLELLAASHALGTLRGGARRRFEALAREQAPVRAAALVWQGRLASMTELQPSITPDPAVWTRIRNMIDAEQSKLAIERQRDAANARAADKAQQPQQGGWLRSLALWRGATAAGALATVLAVTIGLNLRDQLHNAPAVQYVAVLSDDKDAASMLVTFDPKKKQLVLQRVGGFSEGDDKSLQLWALPPGGAPRSLGVLDNAPGLRLAASESDVHAVPALAISLEAKGGVPAGSGPKGPILFKGALIEKTI*