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SCNpilot_cont_300_bf_scaffold_250_curated_7

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(5731..7164)

Top 3 Functional Annotations

Value Algorithm Source
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2I7_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 84.5
  • Coverage: 472.0
  • Bit_score: 768
  • Evalue 3.70e-219
NodT family RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 84.5
  • Coverage: 472.0
  • Bit_score: 768
  • Evalue 1.20e-219
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ADU35708.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.5
  • Coverage: 472.0
  • Bit_score: 768
  • Evalue 5.20e-219

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1434
ATGTTCAAGCGCGCTTTCCCCCTTCGCTCGCTGGCCCTGTCGGCCATGGCCTCGGCCGTGCTCGCGGGCTGCGTCAACCTGGCGCCCGAATACACGGCGCCCGCATCGCCGGTGCCGCAGGCGCTGCCCTCCTCCGGCGTCGAGGCGCCGACGCCGATCGACGTGAGCTGGCGCAGCTTCTTCGTCGAGCCCCGGCTGCGCGGCACCATCGAGCTTGCGCTCGCCAACAACCGCGACCTGCGCGTGGCGGCGCTCAACATCGAGCGCGCGCGGGCGCAGTACGGCATTGCGCGCGCCAGCCTGTTCCCCACGGTGGAAGCCGGCGCGGGCGGCAGCCGCTCGCGCACGCCCGGCAGCCTGTCGACCGGCGGCGAGGCGCGCATCGGCTCCCAGTACAGTGCCGACCTCGGTCTCACGAGCTACGAGATCGACCTGTTCGGCCGCGTGCGCAACCTCGGCGAATCGGCGCTGCAGAGCTACTTCCAGACCGAGGAAACACGGCGCAGCACGCAGATCAGCCTGATCGCATCGGTCGCGACCGCGTGGCTGCAACTGGCGGCCGACGAGCAGCGGCTGCTGCTCGCGCGCAACACGCTCGAGAGCCAGCGCAAGTCCTTCGACCTGGTGCAGCGCAGCCACCGGCTCGGCGCGCAATCGGGCCTGGCGCTCGCGCAGGCGCAGAGCACGGTCGATTCGGCGCGCGCCGACGCGGCCGCGTTCGACAGCCAAGTCGAGCAGGACCGCAATGCGCTTGCGCTGCTGGTCGGCGCCATGCCGCCGGCCGACCTGCTGCCCGCCGCGCCCGCTTCGGACACCGCGGCGCCGGCCGATGCCGCCCGGTTGCTCGTGCCGCCGCCGGACCTGCCGTCGAGCGTGCTGAACCGGCGCCCCGACGTGCGCGCCGCCGAACACGCGCTGCGCGCGAGCAATGCCGACATCGGCGCCGCGCGCGCTGCGTTCTTCCCGCGCATCGCGCTCACCGCGTCGGCGGGCACCGCGAGCAGCACGCTGTCGGGCCTGTTCGCGGGCGGCAGCCAGGCATGGAGCTTCGCGCCTTCAATCAGCGTGCCGATCTTCGACGGCGGCGCCAATCGCGCCAACCTGCGCGTGGCCGAGGCGCAGCAGAAGATCCAGATCGCCACTTATGAGAAAGCGGTGCAGACCGCCTTCCGCGAAGTGGCCGACGCGCTGGCCGAACGCCGCACGCTGGCCGAGCGGCTCGACGCGCAGCGCTCGCTGCTGGGCGCCACCTCGCGCAGCTTCGAGCTGTCGCAGTCGCTGTTCAGGAGCGGCGCGAGCAGCTATCTCGACGTGCTCGACGCGCAGCGCGCCTATTACGCGGCGCAGCAGGCGCTGATCGGCCTGCAGCTCACGGAGCAGACCAACCGGCTGACGATCTACAAGACGCTGGGGGGCGGCTGGGAAGAGAGTTAG
PROTEIN sequence
Length: 478
MFKRAFPLRSLALSAMASAVLAGCVNLAPEYTAPASPVPQALPSSGVEAPTPIDVSWRSFFVEPRLRGTIELALANNRDLRVAALNIERARAQYGIARASLFPTVEAGAGGSRSRTPGSLSTGGEARIGSQYSADLGLTSYEIDLFGRVRNLGESALQSYFQTEETRRSTQISLIASVATAWLQLAADEQRLLLARNTLESQRKSFDLVQRSHRLGAQSGLALAQAQSTVDSARADAAAFDSQVEQDRNALALLVGAMPPADLLPAAPASDTAAPADAARLLVPPPDLPSSVLNRRPDVRAAEHALRASNADIGAARAAFFPRIALTASAGTASSTLSGLFAGGSQAWSFAPSISVPIFDGGANRANLRVAEAQQKIQIATYEKAVQTAFREVADALAERRTLAERLDAQRSLLGATSRSFELSQSLFRSGASSYLDVLDAQRAYYAAQQALIGLQLTEQTNRLTIYKTLGGGWEES*