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SCNpilot_cont_300_bf_scaffold_53_curated_17

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 17501..17746

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=3 Tax=Variovorax paradoxus RepID=HFQ_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 161
  • Evalue 3.50e-37
RNA chaperone Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 161
  • Evalue 1.10e-37
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 161
  • Evalue 4.90e-37

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 246
GTGAGCAATAAAGGGCAACTTCTGCAAGACCCGTTTCTGAATACCCTGCGTCGCGAGCATGTGCCGGTTTCCATTTATTTGGTGAACGGTATCAAGCTGCAGGGGCAGATCGAGTCTTTTGACCAATACGTCGTGCTGCTCCGCAACACAGTGACGCAAATGGTCTACAAGCACGCCATTTCCACCATCGTGCCGGGTCGTGCCGTCAATTTCTCGGCTGCCGAGAACGACGACGCCGCAGCCTGA
PROTEIN sequence
Length: 82
VSNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVNFSAAENDDAAA*