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SCNpilot_cont_300_bf_scaffold_59_curated_10

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 10586..11773

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Variovorax paradoxus RepID=UPI000362C184 similarity UNIREF
DB: UNIREF100
  • Identity: 92.4
  • Coverage: 395.0
  • Bit_score: 694
  • Evalue 5.60e-197
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJL76974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.9
  • Coverage: 395.0
  • Bit_score: 666
  • Evalue 1.80e-188
RND family efflux transporter mfp subunit similarity KEGG
DB: KEGG
  • Identity: 88.6
  • Coverage: 395.0
  • Bit_score: 659
  • Evalue 8.20e-187

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1188
ATGTCCGCAGACAAGCCGGCCGCAAAGACTGCCAAGGCTCCCGGTGCCGGCGGTGGTGCGCCCGGCGCAAGCGGCGCGCCTGCGCTCGTGACGCTGGCCACCGCGCAGAAGCAGGACGTGCCGGTGACCGTGCAGGTCAACGGCAGCGTGGTGTCCCTCAACAGCGTCGACCTGCGCCCGCAGGTGACCAACACGGTGAGCGCGGTGCATGTGAAGGAAGGCCAGTTCGTCAAGGCCGGCCAGTTGCTCTTCACGCTCGACGACCGCAACGACCAGGCCAATCTGGCGCGTGCCAAGGCCCAGCAGCAGAAGGACGAGGCCACGCTGGCCGACCTCGAGCGCCAGTACAAGCGCAGCCAGGACCTGGTGGCGCAGAACTTCATCGCCAAGAGCGCCGCCGACGCCACGCTGTCGCAGCTCGAGGCGCAGCGTGCCGCCGTGGCCGCCGACCGCGCCGCCGTGCAGTCGGCCCAGGTGGCGCTGGGCTACGCCACCCTGCGCGCGCCCATTGCCGGGCGCATCGGCGCCGTCAACATCTATCCGGGCACGCTGGTGCAGCCGACGCTGTCGCTGGTGACGGTCACGCAGCTCGACCCGATCGCGGTGAGCTTCCCGGTGCCCGAGGGCAACCTGCAGGATCTGCTGGAGGCCTCGCGTTCGCGCTCGAAGGTCGAGGCGGTCGTCACCGGCCGCAAGGAGCCGCTGGCCGGCACGCTCGATTTCGTCGACAACACGGTCGATCCGCAGATCGGCACGGTGCGCGCCAAGGCGGTGTTCGCCAATGCCGACCAGGGCCTTTGGCCGGGGCAGTTCGTCGGCACGCGCATCACGGTGCGTACGCTGGAGGGCGCCACGGTGGTGCCGGCCGCGGCACTGATGATGCTGTCCGACGGCCCGTCGCTGTACGTGGTCGATGAGGGCAAGACCGCCACCCGCCGCAAGGTGAAGGCGCTGCACACCTTCGGCACCAAGGTAGCCGTCAGCGGCGTGGAGCCCGGCGAGCAGGTGGTGATCGAGGGCAGCCAGAACGTGCGCCCGGGCGGCAAGGTCCGCGTCGATGCGAAGGCGCCGGCCGCGGCGCCTGGCGCGCCAGAGTCCCCGGCCAAGGGCACCACGGGCGTCACGCCCGGCAGCGCCGCGTCTTCGGACGGCACCGACGTCAAGCCGCCGCGGCAGGAACGCGCATGA
PROTEIN sequence
Length: 396
MSADKPAAKTAKAPGAGGGAPGASGAPALVTLATAQKQDVPVTVQVNGSVVSLNSVDLRPQVTNTVSAVHVKEGQFVKAGQLLFTLDDRNDQANLARAKAQQQKDEATLADLERQYKRSQDLVAQNFIAKSAADATLSQLEAQRAAVAADRAAVQSAQVALGYATLRAPIAGRIGAVNIYPGTLVQPTLSLVTVTQLDPIAVSFPVPEGNLQDLLEASRSRSKVEAVVTGRKEPLAGTLDFVDNTVDPQIGTVRAKAVFANADQGLWPGQFVGTRITVRTLEGATVVPAAALMMLSDGPSLYVVDEGKTATRRKVKALHTFGTKVAVSGVEPGEQVVIEGSQNVRPGGKVRVDAKAPAAAPGAPESPAKGTTGVTPGSAASSDGTDVKPPRQERA*