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SCNpilot_cont_300_bf_scaffold_200_curated_20

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(17067..17987)

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035CDFCC similarity UNIREF
DB: UNIREF100
  • Identity: 94.8
  • Coverage: 306.0
  • Bit_score: 572
  • Evalue 3.20e-160
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 93.1
  • Coverage: 306.0
  • Bit_score: 564
  • Evalue 2.80e-158
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU39012.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.1
  • Coverage: 306.0
  • Bit_score: 564
  • Evalue 1.20e-157

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 921
ATGCGCTTTGCCGAAATCGAGACATTCCGGGCCCTGATGCGCGGCAGCTCCACGCGCAAGGCCGCCGCCTTGCTGCATCTGACGCAGCCCGCCATCAGCCAGTCCCTCAAGCGTCTCGAAGCACAGGCGGGCATGCTGCTGTTCGAACGCACCGGCGGCCGGCTGGTGCCCACGCCCGAGGCGCGCGCCCTCTGGATCGAGGTCGAGCGGGTGTTCATCGGCATGGACGCCATCGAGCACCGGGTGCGCAGCCTGCGCGACTTCGGCGTGAGCCAGCTCGAGCTGAGCTGCTTTCCGGCCTACGGCCTGGGCTTCATGCCGCGCGCGCTGGCGCGGCTGAAGGCGCACCGCGGCGCGAGCCCCTGGCCGCAGGTGTCGCTGCAGGTGCTGAGTTCCAAGGACGTGCGCGACCGCGTGGCCATGGGCATATCCGACTTCGGTCTGATGGCCGACGAACTCTCGCTCGAAGGCATCGACCACTCCACCTTCGCGCGCTTCCCCGGCGTGGTGGTGATGCCGCCGGACCATGCGCTCGCGCGCTTCAAGACCATCAAGCCGGAGCAGCTGGCCGAGGCGCCCTTCATCGCGCTGAACCCCGAAGACCCTTCGCACCAGCGGCTGGAGGCCGCATTGGCACCGCACGGCGTGGCGCTGCGCGTGCTGGTGCAGACGCCCTATGCTGCCAGCGTCTGCGAGATGGCGCTGCGCGGCCTGGGGGTGGGCCTGGTCAATCCGATCACCGCGCTCGACTATGCGGAACGCGGCCTGGTGGTGCGCAAGTTCTCGGTCGACGTGTACTTCACCTGCCTGCTGGCCATGCCCGCGGGCAAGGTGCTGTCGGCCACCGCGCGCGACTTCATCTCGCTGATGCGCCAGCAACTGGCCGAGGACGAAAAGCGGATCCTGCGCTACCTGCGCTGA
PROTEIN sequence
Length: 307
MRFAEIETFRALMRGSSTRKAAALLHLTQPAISQSLKRLEAQAGMLLFERTGGRLVPTPEARALWIEVERVFIGMDAIEHRVRSLRDFGVSQLELSCFPAYGLGFMPRALARLKAHRGASPWPQVSLQVLSSKDVRDRVAMGISDFGLMADELSLEGIDHSTFARFPGVVVMPPDHALARFKTIKPEQLAEAPFIALNPEDPSHQRLEAALAPHGVALRVLVQTPYAASVCEMALRGLGVGLVNPITALDYAERGLVVRKFSVDVYFTCLLAMPAGKVLSATARDFISLMRQQLAEDEKRILRYLR*