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SCNpilot_cont_300_bf_scaffold_83_curated_16

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(13944..14327)

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000381AE24 similarity UNIREF
DB: UNIREF100
  • Identity: 92.8
  • Coverage: 125.0
  • Bit_score: 228
  • Evalue 3.70e-57
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|SAAS:SAAS00062113}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.8
  • Coverage: 125.0
  • Bit_score: 229
  • Evalue 3.00e-57
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha similarity KEGG
DB: KEGG
  • Identity: 92.0
  • Coverage: 125.0
  • Bit_score: 227
  • Evalue 2.00e-57

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 384
ATGAGAATGAATGCTGCCGATTTCACGCTCGAGGCTCTAGAAACGCCTGCGCTGACCAAGGCGCATCTGGCCGACCTGCTGTTCGAGCAGATCGGCCTGAACAAGCGTGAGTCCAAGGACATGGTCGAGGCGTTCTTCGAGCTCGTGGCGAACAGCCTGATCGAAGGCACGGACGTGAAGATCTCGGGCTTCGGCAACTTCCAGATCCGCGTGAAGGCGCCGCGCCCTGGTCGCAATCCGCGCACCGGCGAAGCCATTCCGATCGGCGAGCGCCGCGTGGCCACGTTCCACGCGAGCGCCAAGCTCAAGGAGCAGATTCACGGCAACATCGACCCGCAGGCCGCTGGTACGACCGAGGTCGAGTGGAGCCTTGGCACCGAGTGA
PROTEIN sequence
Length: 128
MRMNAADFTLEALETPALTKAHLADLLFEQIGLNKRESKDMVEAFFELVANSLIEGTDVKISGFGNFQIRVKAPRPGRNPRTGEAIPIGERRVATFHASAKLKEQIHGNIDPQAAGTTEVEWSLGTE*