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SCNpilot_cont_300_bf_scaffold_83_curated_19

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(17999..18358)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L20 n=2 Tax=Variovorax paradoxus RepID=RL20_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 119.0
  • Bit_score: 232
  • Evalue 3.10e-58
rplT; 50S ribosomal protein L20 similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 119.0
  • Bit_score: 232
  • Evalue 9.80e-59
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 119.0
  • Bit_score: 232
  • Evalue 4.40e-58

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 360
ATGCCTCGCGTCAAACGTGGTGTAACGGCTCGCGCCCGCCACAAGAAAGTTCTCGCACTCGCCAAGGGTTTCCGCGGTCGCCGCGGCAATGTCTTCCGCATCGCCAAACAGGCGGTGATGAAGGCAGGCCAATACGCCTACCGTGACCGCCGTACCAAGAAGCGCGTGTTCCGTCAGCTGTGGATCGCGCGTATCAACGCCGCCTCGCGTGAACTGGGCCTGACCTACAGCCAGTTCGCCAACGGTATCCGCAAGGCCGGTATCGAGATCGACCGCAAGATGCTTGCGGACATCGCCGTGCACGACAAGGCCGCATTTGCCGGCATCGTGGAGCAGGTCAAGGCCAAGCTGGCTGCTTGA
PROTEIN sequence
Length: 120
MPRVKRGVTARARHKKVLALAKGFRGRRGNVFRIAKQAVMKAGQYAYRDRRTKKRVFRQLWIARINAASRELGLTYSQFANGIRKAGIEIDRKMLADIAVHDKAAFAGIVEQVKAKLAA*