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SCNpilot_cont_300_bf_scaffold_403_curated_27

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 28849..29565

Top 3 Functional Annotations

Value Algorithm Source
Flagellar biosynthesis pathway, component FliR n=1 Tax=Variovorax sp. CF313 RepID=J2JWH5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 82.4
  • Coverage: 238.0
  • Bit_score: 391
  • Evalue 8.00e-106
Flagellar biosynthesis pathway, component FliR {ECO:0000313|EMBL:EJL72205.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.4
  • Coverage: 238.0
  • Bit_score: 391
  • Evalue 1.10e-105
type III secretion system inner membrane R protein; K02421 flagellar biosynthetic protein FliR similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 239.0
  • Bit_score: 366
  • Evalue 5.10e-99

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 717
ATGATGACCCCTGTGCTCTATGCGGTGCCGCTGCCTGCAACGGTGCGCGTCTTGCTCGTGCTGAGCTTGTCGGTGGCCCTGGCTTCGGCCTTGACATCTGCTGCCGGGGCGCCCGTGGAATGGAGGGTGTTGTTGCCTGCGGCGCTGAGCGAACTCGTCCTTGGCGCGGTTCTCGGGCTCGGCATATTGCTGGCGTTTGGTGCGTTTACGGTCGCAGGCCAGATGCTGGATGTTCAGCTGGGCTTCGGTATCGCGCAGATCATGGATCCCGTCACCCGGCGCCCTGTGCCGATCCTTACCACGGCGTTTGCCTACGTGGCGGTCCTGGTGTTCTTCCTGGTCAACGGCCATCACGCGTTGCTGCGCGGAATCGCATACAGCGTCGAGCGTTTTCCGGTGGGAGCACCTTGGTCTCTGGCGCAGGCCGTGGAGCCTGTGCTCAAGCAGGCGGCGGGGCTTTTCAGCCTGGGCTTTGCCCTGGCGGCACCTGTGGTGTTCTGCATCCTGCTGGCGGAGTTCGCGCTCGGTGTGGTGGGGCGCAACCTGCCGCAGATGAACATGTTCACGATGGGCATCCCAGTCAAGATCATTGTCGGCCTCGTGGCCCTGTCGCTCTGGTTCACGGGTATCGGCGGCGTGATGACCCGGGTCTATGCCGGCATCGCGACGACCTGGGACGAAATTTTCGTGTCGGCACCGCCGCAGTGGGGGCGCTGA
PROTEIN sequence
Length: 239
MMTPVLYAVPLPATVRVLLVLSLSVALASALTSAAGAPVEWRVLLPAALSELVLGAVLGLGILLAFGAFTVAGQMLDVQLGFGIAQIMDPVTRRPVPILTTAFAYVAVLVFFLVNGHHALLRGIAYSVERFPVGAPWSLAQAVEPVLKQAAGLFSLGFALAAPVVFCILLAEFALGVVGRNLPQMNMFTMGIPVKIIVGLVALSLWFTGIGGVMTRVYAGIATTWDEIFVSAPPQWGR*