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SCNpilot_cont_300_bf_scaffold_403_curated_28

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 29565..30659

Top 3 Functional Annotations

Value Algorithm Source
Type III secretion exporter n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN4_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 85.2
  • Coverage: 364.0
  • Bit_score: 613
  • Evalue 2.00e-172
type III secretion exporter; K02401 flagellar biosynthetic protein FlhB similarity KEGG
DB: KEGG
  • Identity: 85.2
  • Coverage: 364.0
  • Bit_score: 613
  • Evalue 6.20e-173
Type III secretion exporter {ECO:0000313|EMBL:ACS18890.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.2
  • Coverage: 364.0
  • Bit_score: 613
  • Evalue 2.80e-172

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1095
ATGGCAGAGCAAGACCTGGATCGCAACGAGGCGGCAACGCCCTACAAGCTGCAGCGCGCCCGAGAGCGAGGACAAGCCGCGAAAAGCACGGACGTCGTCGGCGCAATCGTCTTTACGGTGGCTGCGGTCTACCTGACATGGCGCGGGTTCGGTGCGGTGGCGACCCAGTTCCGCTTCGATCAGGCGGTACTCATCCAGGCAGGACGGATGGACCCATCGGGAGCCGGATTGTGGCCGCTGACCGAACGCGCGCTGCGCGCGGTATTCGTGCTGTCGGCCCCTTTCTTCGCGACGGTCATGCTGGCTGCGGTGGTCGGCAACATGATGCAGACGGGACCCATGCTCTCGTTCGATCCGGTCAAGATGGACTTCAATCGCATCAATCCAGTCAACGGGCTCAAAAGGCTGTTCTCGATGCGGGTGCTCTTCGATACCGCACGAGCACTCATCAAGCTCACGCTGCTGGGCCTGGTTTCGGTGCTGGCACTCAAGGCTTTGCTGGGCCAGTTCTATGGTCTCGCGTCGCTGTCTCCAATCGGTTATTTGCGCACCCTGCTGGACGACCTGTCGAGTGTGGCGCTGAAGATGGCGCTTGTGCTGGGGCTCATTGCGTTGCTGGATTTGATGTACACACGGCGCGAATTCGCCAAGAAGATGCGCATGAGCCAGCGGGACATCAAGGATGAGGCCAAACACCGCGACGGCGATCCTCGTATTCGCGCCCGCCTGCGCGAGCTGCGTCGAGAGACGCTCAAGCGCAGCCTCGCACTGCGCGAGACGCGCAATGCGGATGTGCTGATCACGAACCCCACCCACTTCGCTGTGGCGCTGAAATACGACCACGGCCGCATGGTGTCACCGCAGCTGCTGGCCAAGGGCAGCGGGCACATGGCCGCTGCAATGCGCGAGATCGCCGCGCGTCACGGCATCCCGGTGGTCCAGAACCCGCCGCTGGCCAGGCGCCTCTATCGCGAGCTTCCCGTCGATCAGGCGGTTCCGCCGGAACTCTATGCGCAGGTCGCACGCATCATCGTTTGGGTGTTCGCAATGCGCGAACAGCGCCAGGGTCTTGTCGCGAAGGGAGTTCAAGCATGA
PROTEIN sequence
Length: 365
MAEQDLDRNEAATPYKLQRARERGQAAKSTDVVGAIVFTVAAVYLTWRGFGAVATQFRFDQAVLIQAGRMDPSGAGLWPLTERALRAVFVLSAPFFATVMLAAVVGNMMQTGPMLSFDPVKMDFNRINPVNGLKRLFSMRVLFDTARALIKLTLLGLVSVLALKALLGQFYGLASLSPIGYLRTLLDDLSSVALKMALVLGLIALLDLMYTRREFAKKMRMSQRDIKDEAKHRDGDPRIRARLRELRRETLKRSLALRETRNADVLITNPTHFAVALKYDHGRMVSPQLLAKGSGHMAAAMREIAARHGIPVVQNPPLARRLYRELPVDQAVPPELYAQVARIIVWVFAMREQRQGLVAKGVQA*