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SCNpilot_cont_300_bf_scaffold_118_curated_2

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 118..432

Top 3 Functional Annotations

Value Algorithm Source
30S ribosomal protein S10 n=7 Tax=Comamonadaceae RepID=RS10_POLNA similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 104.0
  • Bit_score: 205
  • Evalue 3.60e-50
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 104.0
  • Bit_score: 205
  • Evalue 1.10e-50
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 104.0
  • Bit_score: 205
  • Evalue 5.00e-50

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 315
ATGGCAACCAAGCAAAAAATCCGCATCCGCCTGAAGGCGTTCGACTACAAGCTGATCGACCAATCGGCAGCCGAAATCGTTGACACCGCCAAGCGCACCGGCGCGATCGTCAAGGGTCCCGTGCCCCTGCCGACCCGCATGAAGCGTTTCGACATCCTGCGTTCGCCGCACGTCAACAAGACGTCGCGCGACCAGCTGGAAATCCGTACGCACCAGCGCCTGATGGACATCGTCGACCCGACCGACAAGACCGTGGACGCGCTGATGAAGCTCGACCTGCCGGCCGGCGTGGACGTCGAAATCAAGCTGCAGTAA
PROTEIN sequence
Length: 105
MATKQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAIVKGPVPLPTRMKRFDILRSPHVNKTSRDQLEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ*