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SCNPILOT_SOLID_1_TRIM150_UNK

In projects: SCNPILOT_SOLID_1_TRIM150

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.46 Longest contig: 777.41 Kbp Bin length: 77.02 Mbp GC content: 57.82 %
Contigs count: 31163 Features count: 97682 rRNAs count: 33 tRNAs count: 973

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 16
Displaying items 101-150 of 31163 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_33998
Species: CG_Omnitr_01 (50%)
2 1203 bp 40.65 2.87 103.74
scnpilot_solids1_trim150_scaffold_17548
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1929 bp 69.00 3.42 103.73
scnpilot_solids1_trim150_scaffold_32916
Species: Candidatus Paracaedibacter acanthamoebae (75%)
4 1230 bp 40.89 4.88 103.66
scnpilot_solids1_trim150_scaffold_21072
Species: Chitinophaga pinensis (66.67%)
3 1696 bp 45.87 4.60 103.66
scnpilot_solids1_trim150_scaffold_35943
Species: CG_Arma_02 (50%)
2 1155 bp 45.37 3.64 103.64
scnpilot_solids1_trim150_scaffold_32623
Species: Acinetobacter sp. ANC 3862 (50%)
2 1239 bp 62.31 3.15 103.63
scnpilot_solids1_trim150_scaffold_27308
Species: Candidatus Amoebophilus asiaticus (100%)
2 1410 bp 35.67 5.11 103.62
scnpilot_solids1_trim150_scaffold_30830
Species: Sphingopyxis sp. MC1 (100%)
3 1292 bp 59.98 22.76 103.56
scnpilot_solids1_trim150_scaffold_33443
Phylum: Bacteroidetes (66.67%)
3 1217 bp 39.69 3.33 103.53
scnpilot_solids1_trim150_scaffold_36928 2 1133 bp 62.05 4.77 103.53
scnpilot_solids1_trim150_scaffold_37678
Genus: Sphingopyxis (66.67%)
3 1116 bp 59.59 3.23 103.50
scnpilot_solids1_trim150_scaffold_18047 4 1892 bp 49.52 3.17 103.38
scnpilot_solids1_trim150_scaffold_37239
Species: Microvirga aerilata (50%)
2 1126 bp 67.50 3.33 103.38
scnpilot_solids1_trim150_scaffold_32420
Species: Nitrosomonas sp. AL212 (50%)
2 1245 bp 57.11 2.89 103.37
scnpilot_solids1_trim150_scaffold_29272
Species: Mycobacterium tuberculosis (50%)
2 1341 bp 67.79 2.91 103.36
scnpilot_solids1_trim150_scaffold_8287
Order: Burkholderiales (60%)
5 3315 bp 63.68 4.75 103.35
scnpilot_solids1_trim150_scaffold_35417
Species: Achromobacter xylosoxidans (50%)
2 1167 bp 60.33 3.21 103.34
scnpilot_solids1_trim150_scaffold_37828
Species: Aspergillus flavus (50%)
2 1112 bp 49.19 3.64 103.33
scnpilot_solids1_trim150_scaffold_42403
Species: Brevundimonas diminuta (100%)
2 1022 bp 64.48 12.62 103.33
scnpilot_solids1_trim150_scaffold_22978
Species: Hyphomicrobium denitrificans (100%)
2 1597 bp 57.48 4.88 103.32
scnpilot_solids1_trim150_scaffold_19205
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1812 bp 72.46 4.47 103.31
scnpilot_solids1_trim150_scaffold_25152
Species: R_Gallionellales_57_47 (50%)
2 1496 bp 69.25 3.81 103.28
scnpilot_solids1_trim150_scaffold_18857
Species: Bradyrhizobium sp. STM 3809 (50%)
2 1833 bp 58.27 3.93 103.27
scnpilot_solids1_trim150_scaffold_61524
Species: Sphingopyxis sp. MC1 (100%)
2 1386 bp 69.99 34.09 103.25
scnpilot_solids1_trim150_scaffold_24063
Class: Alphaproteobacteria (100%)
3 1543 bp 60.34 12.05 103.24
scnpilot_solids1_trim150_scaffold_37531
Species: Mesorhizobium sp. L2C067A000 (50%)
2 1119 bp 60.23 3.75 103.22
scnpilot_solids1_trim150_scaffold_28257
Order: Sphingomonadales (66.67%)
3 1375 bp 67.42 3.93 103.20
scnpilot_solids1_trim150_scaffold_25682
Species: Kutzneria sp. 744 (50%)
2 2692 bp 69.43 50.09 103.20
scnpilot_solids1_trim150_scaffold_21729
Species: R_Bacteroidetes_44_7 (50%)
2 1660 bp 40.78 3.25 103.19
scnpilot_solids1_trim150_scaffold_37803
Species: Methylibium petroleiphilum (100%)
2 1605 bp 69.60 5.79 103.18
scnpilot_solids1_trim150_scaffold_31933
Order: Caulobacterales (100%)
3 1259 bp 69.18 4.65 103.18
scnpilot_solids1_trim150_scaffold_7992 7 3405 bp 50.75 3.83 103.17
scnpilot_solids1_trim150_scaffold_18030
Species: Stenotrophomonas maltophilia (50%)
2 1893 bp 59.01 3.96 103.17
scnpilot_solids1_trim150_scaffold_42995
Species: Hyphomicrobium denitrificans (50%)
2 1012 bp 60.18 2.08 103.16
scnpilot_solids1_trim150_scaffold_33948
Order: Rhizobiales (66.67%)
3 1204 bp 63.12 12.33 103.16
scnpilot_solids1_trim150_scaffold_13159
Species: Sphingobium chinhatense (50%)
2 2371 bp 69.72 31.70 103.12
scnpilot_solids1_trim150_scaffold_31885
Species: Geodermatophilus obscurus (50%)
2 1260 bp 57.94 3.81 103.10
scnpilot_solids1_trim150_scaffold_26877
Species: Moumouvirus (50%)
2 1426 bp 25.60 4.00 103.09
scnpilot_solids1_trim150_scaffold_18037
Species: Saprospira grandis (50%)
2 1892 bp 55.23 4.12 103.07
scnpilot_solids1_trim150_scaffold_49936
Species: Sphingobacterium paucimobilis (100%)
2 1654 bp 35.67 3.72 103.02
scnpilot_solids1_trim150_scaffold_23835
Order: Cytophagales (66.67%)
3 1555 bp 36.46 3.09 103.02
scnpilot_solids1_trim150_scaffold_28737
Genus: Sphingomonas (100%)
3 1357 bp 70.60 3.54 103.02
scnpilot_solids1_trim150_scaffold_38518
Species: Neosartorya fischeri (50%)
2 1098 bp 53.37 2.73 103.01
scnpilot_solids1_trim150_scaffold_19417
Order: Sphingobacteriales (60%)
5 1797 bp 30.33 5.01 103.01
scnpilot_solids1_trim150_scaffold_8006
Class: Gammaproteobacteria (50%)
4 3402 bp 60.41 7.19 103.00
scnpilot_solids1_trim150_scaffold_41699 2 1034 bp 73.02 5.95 103.00
scnpilot_solids1_trim150_scaffold_41735
Species: Herbaspirillum sp. YR522 (50%)
2 1034 bp 72.24 5.08 103.00
scnpilot_solids1_trim150_scaffold_25834
Species: Arthrobacter phenanthrenivorans (66.67%)
3 1468 bp 65.74 4.29 103.00
scnpilot_solids1_trim150_scaffold_35165
Species: Sphingobium japonicum (50%)
2 1174 bp 67.29 3.58 102.98
scnpilot_solids1_trim150_scaffold_39485
Species: Stenotrophomonas maltophilia (50%)
2 1078 bp 61.69 2.78 102.97
Displaying items 101-150 of 31163 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.