ggKbase home page

scnpilot_solids1_trim150_scaffold_3807_6

Organism: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9

near complete RP 50 / 55 MC: 3 BSCG 49 / 51 MC: 2 ASCG 10 / 38 MC: 1
Location: 4118..5761

Top 3 Functional Annotations

Value Algorithm Source
Peptidoglycan-binding lysin domain n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T798_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 26.4
  • Coverage: 193.0
  • Bit_score: 60
  • Evalue 5.70e-06
Peptidoglycan-binding lysin domain {ECO:0000313|EMBL:EGD49346.1}; Flags: Precursor;; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 26.4
  • Coverage: 193.0
  • Bit_score: 60
  • Evalue 7.90e-06

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

[Clostridium] papyrosolvens → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1644
ATGCGTTTCGTTAGGGGAAGGCGTTCACACCAGCTCGGTCTCGTCGCGGCACTGGCCGTGGTGGCGCTCTGTCTCGTATTCGCCGCGACCGCGGCAGCCGAAGTGCGCACCGGGTCGGCGACCGATCCGGTCGAAAACAAACTGCCTGGTCGAGACATCACGGCGGTCGCGGCCTCTTACGACACGGCTGGGTCGATACAGGTCGCAGTGACGACTGCCGGCCCGCCCGAAAGCTCCTCCGATGTCGGTCTCGGCATTCTCGTCGGTACTTCCGTCTCGGGCGAATGCGACGAACCGTTCAGCGTGATCTCGTCTCTCTACTCTCAACCGAACACCGCCACTTGGAGCTTCAACGGCATCGAAGAATCCGGCCTGAAGCAGATCGCCGGGAGCACGACCACCCTGGGCGCATCATCCCCAATCCTCGCCAACCAGCCATTCGATTGCGTCGCACCGTTCGTACTCGAATACAACTCGGCGCTGGAAGAATTCGAAGTGACCGAGGGGCTCGCCGAACCGCTTCGTCTCGTCGGTCCCCCACCACCTCCTCCTCCGGCACCGACTCCCAGCCCGAGCCCGGCTCCCGCGCCTCCGCCCGCGCCCGCGCCACCCCCGAAAGCCAACCTCGTCTTCCCCGCGAAGACCGTCACCCTTCACCGCAACAAGTGGAAAAAGGTCACGGTCAAGATCACGAATACGGGGGACGCCGCGGCGGAGAAGGTATTGCTCAAGGTCGGGAAGGCGCGTGGGGTCGCGCTCAAACCGAAGTCGGGCAAGTTGAAGCTGAAGTCGATCGGGGCCGGGAAGTCGAAGGTCGCCTCGTTCAAGGTCAAGCTCACCAAAAAGGCGAAGGCCCGCTCGAAGCTGAAGCTCTCGCTCACCGCCGCGAAAGGCGTCAAGGCTTCCGGCCTGCTGACCGTCGAAGCGTGGAAGAAAAAGAAGGCGCCCAAGAAGGGCGGTCAAGGGAAGGAAGCTTCCGCGTCGCTGGCGGAACGGATCTTCTACGCGTACAAAACTGAAACGAGCCATTCCGCGACCCTGATCGGGTACGCGTTCATCGACGGCGAATGGGCGTGGCACGGAATGCCCGAGGAAGGCCTGCCCTCGTGTACCGAAATCACCGGCAACGCGGAAAAGGAAGGGTGCGTCAAATACCGCTACGACGCGACCACCGGATCGGTGCAGGTCGGATCGCTCACCGGAACGTTGAACAGCGACGGTGGGCTCGAAGTCGACGGCGAAACGTACTTCGCGACCTCGACCCCGGCGGCCGGCACGCGCCTGCAGGTCGAACAGGAATTCATCGGCTACAGCGGCCTCTGCGGCCTGATCACCGGCTGCTCGACCTGGCACGAACACCTCCTGCTCACCGAATCGAGCGAATTCGTCCTCTCGAAGGAATCGCTGACCACCGTCGGCGGCACCGGGCCGGGCCAAACCTTCATCGCCGCGGGCAGCTACCCGCCCGATCAACACGGCACCTACGCGATCGAAAAAGGCGCGCGAATCAAGTTCACCTTCGCCGACGGCACCGTCGAGACCAAGACGATCGCGATCCTCCTGAACAAGGAAGGCAAGCCTGACCCGGTCAATGAAGGGCTACTGCTCGGCGAGAACTACTTCACCTTCGCGCACACTGAGTAG
PROTEIN sequence
Length: 548
MRFVRGRRSHQLGLVAALAVVALCLVFAATAAAEVRTGSATDPVENKLPGRDITAVAASYDTAGSIQVAVTTAGPPESSSDVGLGILVGTSVSGECDEPFSVISSLYSQPNTATWSFNGIEESGLKQIAGSTTTLGASSPILANQPFDCVAPFVLEYNSALEEFEVTEGLAEPLRLVGPPPPPPPAPTPSPSPAPAPPPAPAPPPKANLVFPAKTVTLHRNKWKKVTVKITNTGDAAAEKVLLKVGKARGVALKPKSGKLKLKSIGAGKSKVASFKVKLTKKAKARSKLKLSLTAAKGVKASGLLTVEAWKKKKAPKKGGQGKEASASLAERIFYAYKTETSHSATLIGYAFIDGEWAWHGMPEEGLPSCTEITGNAEKEGCVKYRYDATTGSVQVGSLTGTLNSDGGLEVDGETYFATSTPAAGTRLQVEQEFIGYSGLCGLITGCSTWHEHLLLTESSEFVLSKESLTTVGGTGPGQTFIAAGSYPPDQHGTYAIEKGARIKFTFADGTVETKTIAILLNKEGKPDPVNEGLLLGENYFTFAHTE*