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scnpilot_solids1_trim150_scaffold_40822_1

Organism: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9

near complete RP 50 / 55 MC: 3 BSCG 49 / 51 MC: 2 ASCG 10 / 38 MC: 1
Location: comp(2..166)

Top 3 Functional Annotations

Value Algorithm Source
AraC family transcriptional regulator n=1 Tax=Rhodococcus ruber RepID=UPI00037C5722 similarity UNIREF
DB: UNIREF100
  • Identity: 80.0
  • Coverage: 40.0
  • Bit_score: 67
  • Evalue 4.60e-09
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:KJE21823.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.5
  • Coverage: 40.0
  • Bit_score: 67
  • Evalue 5.00e-09
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 81.6
  • Coverage: 38.0
  • Bit_score: 65
  • Evalue 5.60e-09

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Taxonomy

Frankia sp. CpI1-S → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 165
ATGAGTTCGCAGAAACCCGCGCATAGCGCGGAGAAGTGCGAACTCGACCGGAAGCGGCTCGAAGATCTGGCGCGGCTGCGGCAGGTGCGGGACCGGATCGACCGGGAGTACGCGCGGCCGCTGAACGTCGAGGCGCTCGCGGCGGGCGTCCACATGTCCTCCGGG
PROTEIN sequence
Length: 55
MSSQKPAHSAEKCELDRKRLEDLARLRQVRDRIDREYARPLNVEALAAGVHMSSG