ggKbase home page

scnpilot_solids2_trim150_scaffold_519_28

Organism: SCNPILOT_SOLID2_TRIM150_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 16
Location: 26113..26652

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G3C5_ECHVK similarity UNIREF
DB: UNIREF100
  • Identity: 33.3
  • Coverage: 174.0
  • Bit_score: 113
  • Evalue 1.90e-22
RNA polymerase sigma-70 factor, expansion family 1 similarity KEGG
DB: KEGG
  • Identity: 33.3
  • Coverage: 174.0
  • Bit_score: 113
  • Evalue 5.80e-23
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:AGA80739.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 33.3
  • Coverage: 174.0
  • Bit_score: 113
  • Evalue 2.60e-22

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Echinicola vietnamensis → Echinicola → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 540
TTGCAACCAACAGATGAAATAGAACTGCTTAACCGTCTTTCAAAAAGTGAAAAAAAAGCTTTCCGGATTATTTATGAGCGCTACTGGGAGCGCTTATATCACCTGTGTTTTTATTATATCGCCTCGCGGGAAGAAGCCGAGGACCTCGTGATGAATGTCTTTATGTCGCTGTGGAAGAATCGTTCAAAAATACAAATAGACCACCTGGAACATTACCTGGTAAAAGCCGCCAAGAATCAATCGCTTAAATTTATTCTTAAACAGCAAAAGCAACGAAAGCAATTTCATCAGCTAAAGGAAAGAAAAACACTTTTGCCAGACCTGAGCTATTCGCCCCAGCAGCTATTAGAGGCCAAAGAACTTTCTTCCCGTATTTATGACAACCTCCAGGAACTTTCACCCAGGACCCAGCAGATTTTTTTATTGAACCGTGAGAAAGGATTTACATACGAACAGATAGCCGGCTTTTTGGGTATATCCGTTAAGACCGTTGAATACCATATTTCAAAAGCAATACATACTTTAACCAGTATATCCTGA
PROTEIN sequence
Length: 180
LQPTDEIELLNRLSKSEKKAFRIIYERYWERLYHLCFYYIASREEAEDLVMNVFMSLWKNRSKIQIDHLEHYLVKAAKNQSLKFILKQQKQRKQFHQLKERKTLLPDLSYSPQQLLEAKELSSRIYDNLQELSPRTQQIFLLNREKGFTYEQIAGFLGISVKTVEYHISKAIHTLTSIS*