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SCNPILOT_SOLID2_TRIM150_UNK

In projects: SCNPILOT_SOLID2_TRIM150

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 30.10 Longest contig: 281.24 Kbp Bin length: 79.26 Mbp GC content: 60.11 %
Contigs count: 26052 Features count: 95608 rRNAs count: 34 tRNAs count: 994

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 16
Displaying items 23901-23950 of 26052 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_14666
Species: Mesorhizobium sp. LNHC221B00 (66.67%)
3 1704 bp 62.85 5.37 67.61
scnpilot_solids2_trim150_scaffold_4879
Domain: Bacteria (60%)
5 4602 bp 67.08 8.15 67.60
scnpilot_solids2_trim150_scaffold_21275
Species: Alicycliphilus denitrificans (50%)
2 1287 bp 67.06 6.88 67.60
scnpilot_solids2_trim150_scaffold_28215
Species: Mesorhizobium alhagi (50%)
2 1043 bp 62.22 5.47 67.59
scnpilot_solids2_trim150_scaffold_12940
Genus: Mesorhizobium (100%)
3 1873 bp 63.69 5.13 67.59
scnpilot_solids2_trim150_scaffold_16638
Domain: Bacteria (50%)
4 1549 bp 69.53 11.72 67.59
scnpilot_solids2_trim150_scaffold_22785
Species: Hyphomicrobium sp. MC1 (50%)
2 1225 bp 54.94 4.41 67.59
scnpilot_solids2_trim150_scaffold_18761
Species: Burkholderia pseudomallei (50%)
2 1416 bp 62.64 5.61 67.58
scnpilot_solids2_trim150_scaffold_3831 6 6437 bp 35.87 602.94 67.58
scnpilot_solids2_trim150_scaffold_16013
Species: Halothiobacillus neapolitanus (100%)
1 1594 bp 49.87 3.58 67.57
scnpilot_solids2_trim150_scaffold_28347
Species: RBG_16_Chloroflexi_54_18_curated (50%)
2 1039 bp 64.39 3.90 67.57
scnpilot_solids2_trim150_scaffold_23427
Species: Deinococcus swuensis (50%)
2 1199 bp 48.87 2.50 67.56
scnpilot_solids2_trim150_scaffold_24291
Species: Arthrobacter chlorophenolicus (50%)
2 1168 bp 66.95 5.14 67.55
scnpilot_solids2_trim150_scaffold_7111
Species: Nakamurella multipartita (50%)
2 3078 bp 68.71 29.78 67.54
scnpilot_solids2_trim150_scaffold_16369
Species: Chelativorans sp. BNC1 (100%)
2 1568 bp 57.40 2.87 67.54
scnpilot_solids2_trim150_scaffold_19920
Domain: Bacteria (66.67%)
3 1355 bp 64.43 4.65 67.53
scnpilot_solids2_trim150_scaffold_20345
Species: Hassallia byssoidea (50%)
2 1333 bp 36.91 5.96 67.52
scnpilot_solids2_trim150_scaffold_21894
Species: Nitrosospira lacus (100%)
2 1262 bp 54.83 4.52 67.51
scnpilot_solids2_trim150_scaffold_17359
Species: Rhodopseudomonas palustris (50%)
2 1502 bp 61.78 4.99 67.51
scnpilot_solids2_trim150_scaffold_14511
Phylum: Proteobacteria (66.67%)
3 1720 bp 52.44 5.32 67.50
scnpilot_solids2_trim150_scaffold_10502
Species: Singulisphaera acidiphila (66.67%)
3 2200 bp 64.36 4.23 67.50
scnpilot_solids2_trim150_scaffold_23755
Species: Oligotropha carboxidovorans (100%)
3 1187 bp 60.99 3.29 67.48
scnpilot_solids2_trim150_scaffold_11484
Species: Singulisphaera acidiphila (100%)
3 2050 bp 65.80 5.27 67.46
scnpilot_solids2_trim150_scaffold_20166
Species: Sphingopyxis alaskensis (50%)
2 1343 bp 58.60 4.47 67.46
scnpilot_solids2_trim150_scaffold_7573
Species: Candidatus Amoebophilus asiaticus (100%)
2 2904 bp 35.23 4.24 67.46
scnpilot_solids2_trim150_scaffold_10841
Domain: Bacteria (100%)
3 2148 bp 61.50 4.96 67.46
scnpilot_solids2_trim150_scaffold_19989
Species: Chitinophaga pinensis (100%)
1 1352 bp 44.90 3.33 67.46
scnpilot_solids2_trim150_scaffold_16704
Order: Sphingobacteriales (66.67%)
3 2157 bp 38.80 43.88 67.45
scnpilot_solids2_trim150_scaffold_11578
Species: Sphingopyxis sp. MC1 (66.67%)
3 2037 bp 58.27 4.86 67.45
scnpilot_solids2_trim150_scaffold_11877 3 1997 bp 48.12 4.73 67.45
scnpilot_solids2_trim150_scaffold_25920 2 1112 bp 27.43 3.37 67.45
scnpilot_solids2_trim150_scaffold_12242
Species: Nitrobacter hamburgensis (50%)
2 1953 bp 61.85 5.22 67.43
scnpilot_solids2_trim150_scaffold_19699
Species: Mesorhizobium amorphae (50%)
2 1366 bp 59.96 9.88 67.42
scnpilot_solids2_trim150_scaffold_6032
Domain: Bacteria (100%)
3 4753 bp 69.41 8.17 67.41
scnpilot_solids2_trim150_scaffold_16903
Species: Singulisphaera acidiphila (100%)
2 1531 bp 63.55 5.98 67.41
scnpilot_solids2_trim150_scaffold_14527
Species: Pedobacter heparinus (50%)
2 1718 bp 40.86 3.32 67.40
scnpilot_solids2_trim150_scaffold_12234
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1954 bp 62.69 4.53 67.40
scnpilot_solids2_trim150_scaffold_17797
Species: Mesorhizobium sp. LNHC220B00 (50%)
2 1474 bp 60.45 9.06 67.37
scnpilot_solids2_trim150_scaffold_14004
Species: Genlisea aurea (50%)
2 1768 bp 42.31 6.11 67.36
scnpilot_solids2_trim150_scaffold_22242
Species: Porphyromonas gulae (50%)
2 1247 bp 40.26 3.73 67.36
scnpilot_solids2_trim150_scaffold_10895
Species: RHI_Sphingopyxis_65_19 (100%)
2 2138 bp 63.52 5.68 67.35
scnpilot_solids2_trim150_scaffold_20734
Species: RLO_Burkholderiales_61_40 (50%)
2 1314 bp 48.71 25.11 67.35
scnpilot_solids2_trim150_scaffold_6337
Species: Parvibaculum lavamentivorans (100%)
6 3439 bp 64.79 6.46 67.35
scnpilot_solids2_trim150_scaffold_24683
Order: Rhizobiales (66.67%)
3 1154 bp 59.36 4.16 67.33
scnpilot_solids2_trim150_scaffold_27758 2 1056 bp 66.67 3.41 67.33
scnpilot_solids2_trim150_scaffold_9037
Species: Rhodopseudomonas palustris (100%)
3 2482 bp 62.69 7.13 67.32
scnpilot_solids2_trim150_scaffold_57976
Species: Truepera radiovictrix (50%)
2 1065 bp 62.63 54.08 67.32
scnpilot_solids2_trim150_scaffold_3414
Domain: Bacteria (71.43%)
9 7002 bp 58.20 8.35 67.32
scnpilot_solids2_trim150_scaffold_17788
Domain: Bacteria (66.67%)
3 1475 bp 57.69 3.86 67.32
scnpilot_solids2_trim150_scaffold_16875
Species: Halothiobacillus neapolitanus (100%)
2 1533 bp 50.10 4.01 67.32
Displaying items 23901-23950 of 26052 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.