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scnpilot_solids2_trim150_scaffold_1857_16

Organism: SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 11 / 38
Location: comp(24222..24683)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ65_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 114.0
  • Bit_score: 129
  • Evalue 2.80e-27
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 114.0
  • Bit_score: 129
  • Evalue 8.80e-28
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV98598.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 114.0
  • Bit_score: 129
  • Evalue 3.90e-27

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 462
ATGTCACAGACCCGGGATGAAACTATTTTATGGGAATCATTTCTGAATGGAGATAATCACAGTCTTGAGGTGATCTACAGGATTTATTTTGATGAATTGTACCGGTATGGAATGAAGTGGCTCAAAGATGGGCACCTTGTTGAAGATGTGATCCAGGATCTGTTTGTCAGGTTGATCCAAAGCAGGGGAAACCTTGCAGTGGCACAATCTGTAAAGTTTTATTTATTCCGGGCCTTTAAGAATATGGCTCTTGATAAAATACGGTTCGCAAAAAGGATGGTTGCCGGAAATGAACCATCATCAGATACCTTTCAGCTTGACCTGACTCCCGAAAGTACAATGATTGATAAAGAGGAATATCTTATCATTANNNNNNNNNNNATCGAAGCCATACGGGGCCAGTTGCCAGCCGGTATATTTATTTTCCTGAGCAACCATTTTCTCAGGCTGCACCCATACTGA
PROTEIN sequence
Length: 154
MSQTRDETILWESFLNGDNHSLEVIYRIYFDELYRYGMKWLKDGHLVEDVIQDLFVRLIQSRGNLAVAQSVKFYLFRAFKNMALDKIRFAKRMVAGNEPSSDTFQLDLTPESTMIDKEEYLIIXXXXIEAIRGQLPAGIFIFLSNHFLRLHPY*