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scnpilot_solids2_trim150_scaffold_82

Search features with annotation key words

Displaying items 181-210 of 252 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_82_180
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(184851..185186)
-----------------
DNA (336bp)
protein (112aa)
PadR family transcriptional regulator n=1 Tax=Microbacterium sp. 292MF RepID=UPI000364EAB2
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EFQ82909.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
PadR family transcripitonal regulator; K10947 PadR family transcriptional regulator, regulatory protein PadR
scnpilot_solids2_trim150_scaffold_82_181
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

185327..185998
-----------------
DNA (672bp)
protein (224aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349F91D rbh
Putative HTH-type transcriptional regulator YdfH {ECO:0000313|EMBL:KJL31532.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_82_182
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

185995..187545
-----------------
DNA (1551bp)
protein (517aa)
hypothetical protein; K01720 2-methylcitrate dehydratase [EC:4.2.1.79] rbh
2-methylcitrate dehydratase n=1 Tax=Microbacterium barkeri RepID=UPI000314D182 rbh
2-methylcitrate dehydratase {ECO:0000313|EMBL:EYT60278.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
scnpilot_solids2_trim150_scaffold_82_183
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

187545..188447
-----------------
DNA (903bp)
protein (301aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
prpB; PEP phosphonomutase; K03417 methylisocitrate lyase [EC:4.1.3.30] rbh
2-methylisocitrate lyase n=1 Tax=Microbacterium sp. 11MF RepID=UPI00036DD17F rbh
scnpilot_solids2_trim150_scaffold_82_184
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

188451..189644
-----------------
DNA (1194bp)
protein (398aa)
prpC; 2-methylcitrate synthase (EC:2.3.3.5); K01647 citrate synthase [EC:2.3.3.1] rbh
citrate synthase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037D3640 rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids2_trim150_scaffold_82_185
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(189678..191525)
-----------------
DNA (1848bp)
protein (616aa)
Non-reducing end beta-L-arabinofuranosidase {ECO:0000313|EMBL:KJL23023.1}; EC=3.2.1.185 {ECO:0000313|EMBL:KJL23023.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
Uncharacterized protein conserved in bacteria n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N8G4_MICTS rbh
hypothetical protein; K09955 hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_82_186
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(191529..192422)
-----------------
DNA (894bp)
protein (298aa)
ABC-type sugar transport system, permease component n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N8G3_MICTS rbh
Trehalose transport system permease protein SugB {ECO:0000313|EMBL:KJL23024.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
sugar ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_82_187
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(192435..192692)
-----------------
DNA (258bp)
protein (86aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI00036C317B
Contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIP89234.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein
scnpilot_solids2_trim150_scaffold_82_188
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(192704..193549)
-----------------
DNA (846bp)
protein (282aa)
UDP-glucose 4-epimerase n=1 Tax=Microbacterium barkeri RepID=UPI00037C1876 rbh
Contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIP89237.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
galE; nucleoside-diphosphate-sugar epimerase rbh
scnpilot_solids2_trim150_scaffold_82_189
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(193597..195120)
-----------------
DNA (1524bp)
protein (508aa)
alpha-L-arabinofuranosidase domain-containing protein; K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55] rbh
alpha-N-arabinofuranosidase n=1 Tax=Microbacterium barkeri RepID=UPI0003022FE9 rbh
Contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIP89221.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids2_trim150_scaffold_82_190
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(195151..196065)
-----------------
DNA (915bp)
protein (305aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00035FAD1D rbh
L-arabinose transport system permease protein AraQ {ECO:0000313|EMBL:KJL31538.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_82_191
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(196065..197006)
-----------------
DNA (942bp)
protein (314aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E4645A rbh
L-arabinose transport system permease protein AraP {ECO:0000313|EMBL:KJL31539.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_82_192
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(197006..198340)
-----------------
DNA (1335bp)
protein (445aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D81B10 rbh
Maltose ABC transporter periplasmic protein {ECO:0000313|EMBL:KJL31540.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
putative L-arabinose ABC transporter substrate binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_82_193
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(198428..199444)
-----------------
DNA (1017bp)
protein (339aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002DE2191 rbh
LacI family transcriptional regulator rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_82_194
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

199541..199789
-----------------
DNA (249bp)
protein (83aa)
Antitoxin VapB43 {ECO:0000313|EMBL:KJQ53726.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
scnpilot_solids2_trim150_scaffold_82_195
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

199786..200214
-----------------
DNA (429bp)
protein (143aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
Ribonuclease VapC n=1 Tax=Mycobacterium canettii CIPT 140070017 RepID=L0QZU1_9MYCO
hypothetical protein
scnpilot_solids2_trim150_scaffold_82_196
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

200249..201271
-----------------
DNA (1023bp)
protein (341aa)
LacI family transcriptional regulator n=1 Tax=Agromyces italicus RepID=UPI0003B4272D rbh
Lactose operon repressor {ECO:0000313|EMBL:KJQ55147.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
LacI family transcriptional regulator
scnpilot_solids2_trim150_scaffold_82_197
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

201489..202205
-----------------
DNA (717bp)
protein (239aa)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:KJL23030.1}; EC=5.1.3.4 {ECO:0000313|EMBL:KJL23030.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
ribulose-5-phosphate 4-epimerase; K01786 L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] rbh
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Microbacterium barkeri RepID=UPI00030DB002 rbh
scnpilot_solids2_trim150_scaffold_82_198
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

202202..203776
-----------------
DNA (1575bp)
protein (525aa)
Ribulokinase {ECO:0000313|EMBL:KJL31546.1}; EC=2.7.1.16 {ECO:0000313|EMBL:KJL31546.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
Sugar (Pentulose and hexulose) kinase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YLI7_9MICO rbh
araB; sugar (pentulose and hexulose) kinase rbh
scnpilot_solids2_trim150_scaffold_82_199
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

203788..205305
-----------------
DNA (1518bp)
protein (506aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
araA; L-arabinose isomerase; K01804 L-arabinose isomerase [EC:5.3.1.4] rbh
arabinose isomerase n=1 Tax=Microbacterium barkeri RepID=UPI00030EAA2E rbh
scnpilot_solids2_trim150_scaffold_82_200
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(205653..206945)
-----------------
DNA (1293bp)
protein (431aa)
Xylulose kinase {ECO:0000313|EMBL:KJQ55142.1}; EC=2.7.1.17 {ECO:0000313|EMBL:KJQ55142.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
xylulokinase; K00854 xylulokinase [EC:2.7.1.17] rbh
xylulokinase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036ED1F9 rbh
scnpilot_solids2_trim150_scaffold_82_201
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(207097..208287)
-----------------
DNA (1191bp)
protein (397aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
xylA; xylose isomerase; K01805 xylose isomerase [EC:5.3.1.5] rbh
xylose isomerase n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003627AC4 rbh
scnpilot_solids2_trim150_scaffold_82_202
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(208381..209376)
-----------------
DNA (996bp)
protein (332aa)
LacI family transcriptional regulator n=1 Tax=Arthrobacter sp. PAO19 RepID=UPI0003B5B205 rbh
HTH-type transcriptional repressor CytR {ECO:0000313|EMBL:KJL33800.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_82_203
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

209520..210815
-----------------
DNA (1296bp)
protein (432aa)
Uncharacterized protein n=1 Tax=Bacillus sp. EGD-AK10 RepID=U1YZN4_9BACI rbh
Multiple sugar-binding protein {ECO:0000313|EMBL:KJL33801.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_82_204
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

210823..211839
-----------------
DNA (1017bp)
protein (339aa)
sugar ABC transporter permease n=1 Tax=Promicromonospora sukumoe RepID=UPI0003771A31 rbh
L-arabinose transport system permease protein AraP {ECO:0000313|EMBL:KJL33802.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_82_205
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

211836..212732
-----------------
DNA (897bp)
protein (299aa)
thiamine ABC transporter ATP-binding protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B33FDF rbh
Trehalose transport system permease protein SugB {ECO:0000313|EMBL:KJL33803.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
putative ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_82_206
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

212729..215149
-----------------
DNA (2421bp)
protein (807aa)
Periplasmic beta-glucosidase {ECO:0000313|EMBL:KJL33804.1}; EC=3.2.1.21 {ECO:0000313|EMBL:KJL33804.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
glycoside hydrolase family protein; K05349 beta-glucosidase [EC:3.2.1.21] rbh
beta-glucosidase n=1 Tax=Cellulomonas sp. JC225 RepID=UPI00038113F9 rbh
scnpilot_solids2_trim150_scaffold_82_207
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

215146..216720
-----------------
DNA (1575bp)
protein (525aa)
Beta-xylosidase {ECO:0000313|EMBL:KJL21954.1}; EC=3.2.1.37 {ECO:0000313|EMBL:KJL21954.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
alpha-N-arabinofuranosidase (EC:3.2.1.55); K01198 xylan 1,4-beta-xylosidase [EC:3.2.1.37]; K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55] rbh
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI0003827369 rbh
scnpilot_solids2_trim150_scaffold_82_208
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

216717..217871
-----------------
DNA (1155bp)
protein (385aa)
transcriptional regulator n=1 Tax=Agromyces subbeticus RepID=UPI0003B3C712 rbh
N-acetylglucosamine repressor {ECO:0000313|EMBL:KJL33806.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transcriptional regulator/sugar kinase rbh
scnpilot_solids2_trim150_scaffold_82_209
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

217899..219146
-----------------
DNA (1248bp)
protein (416aa)
Putative xylitol oxidase {ECO:0000313|EMBL:KJQ55149.1}; EC=1.1.3.41 {ECO:0000313|EMBL:KJQ55149.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E51B7C rbh
fad linked oxidase domain-containing protein rbh
Displaying items 181-210 of 252 in total

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