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scnpilot_solids2_trim150_scaffold_6635_8

Organism: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241

near complete RP 48 / 55 MC: 3 BSCG 47 / 51 MC: 1 ASCG 13 / 38
Location: 5917..6708

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor n=1 Tax=Gordonia sihwensis NBRC 108236 RepID=L7LMY0_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 40.1
  • Coverage: 252.0
  • Bit_score: 168
  • Evalue 9.30e-39
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:GAC61398.1}; TaxID=1223544 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia sihwensis NBRC 108236.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.1
  • Coverage: 252.0
  • Bit_score: 168
  • Evalue 1.30e-38
sigB; RNA polymerase sigma-B factor similarity KEGG
DB: KEGG
  • Identity: 39.5
  • Coverage: 261.0
  • Bit_score: 161
  • Evalue 4.70e-37

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Taxonomy

Gordonia sihwensis → Gordonia → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 792
ATGAAAACGCGCAAGAGCCCTACACAATTGAATCACGACGACTTCTGCGGGCAGCAGATATCGGAATTGATGACCGCGCGGGTAAACGGCGATGAGGCCGAACTTCGGCGCGCCGAAGAATCATTGATCGTGGCGTGCCTCCCTCGGGCAGGCGCCGTGGCCCGCAAGTACCGGCAGCGTGGCGTCGACCTCGACGACCTCGAGCAGGTTGCTCGACTCGGGGTGATCAAGGCGGTCCGGGGTTGGGAGCCAGGCAAAGGCGGCCTCCTCGGATACCTGATGCCCACGATCCACGGCGAGGTGAAGCGGTACTTCCGGGACAGGGGCGCACCGATCCGCATTCCGCGGTCCCTGTACGAAGCACACCCGAAGGTGACCTCGGTCGAACGCGATCTGCGGCAACGGCTCTCGCGCGAACCCACCACGGCAGAAACCGCCCGCGCCAGCGGTCTGCCTGAATCGGATGTGCGGCGGGTGAAGCTGGTGGGCAGCGCCAGCCGTCCGCTGTCCACGGACGACTCGGCCGAGTGGATCAGCGAACTCACCAGCGAAGCCGCAGAACTCGACATGGAGATGTGCACGCTACGCGCACTGTTGAAGCCGGCGATGCGGATCCTGTCCGCGCGAGAGCGCCGTATCATCGCGCTGCGATTCGTGTGGGGGCAGAGCCAGGCTCAGATCGCATCGGCATTGGGCGTGAGCCAGATGCACATCTCTCGGCTGCTGGCAGCTGCGCTGGCCAAACTCCGCGCCTACCTCACCGAACGGCAGGCCGTACCACACGTCGCGTGA
PROTEIN sequence
Length: 264
MKTRKSPTQLNHDDFCGQQISELMTARVNGDEAELRRAEESLIVACLPRAGAVARKYRQRGVDLDDLEQVARLGVIKAVRGWEPGKGGLLGYLMPTIHGEVKRYFRDRGAPIRIPRSLYEAHPKVTSVERDLRQRLSREPTTAETARASGLPESDVRRVKLVGSASRPLSTDDSAEWISELTSEAAELDMEMCTLRALLKPAMRILSARERRIIALRFVWGQSQAQIASALGVSQMHISRLLAAALAKLRAYLTERQAVPHVA*