ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 951-1000 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_41001 Species: Microbacterium sp. CH12i (50%)	2	1048 bp	69.85	5.15	100.19
scnpilot_solids1_trim150_scaffold_42955 Species: Microbacterium mangrovi (50%)	2	1012 bp	71.74	5.93	100.20
scnpilot_solids1_trim150_scaffold_25271 Species: Microbacterium mangrovi (50%)	2	1491 bp	71.76	4.33	100.20
scnpilot_solids1_trim150_scaffold_25578 Species: Microbacterium mangrovi (100%)	2	1479 bp	72.14	4.77	100.20
scnpilot_solids1_trim150_scaffold_19584 Species: Microbacterium mangrovi (100%)	2	1787 bp	72.30	4.78	100.22
scnpilot_solids1_trim150_scaffold_19664 Species: Microbacterium foliorum (50%)	2	1781 bp	73.22	5.14	100.23
scnpilot_solids1_trim150_scaffold_29445 Genus: Microbacterium (75%)	4	1335 bp	70.49	5.28	100.23
scnpilot_solids1_trim150_scaffold_29915 Species: Arthrobacter phenanthrenivorans (100%)	2	1320 bp	69.32	4.77	100.23
scnpilot_solids1_trim150_scaffold_31373 Species: Arthrobacter sp. PAMC25486 (50%)	2	1275 bp	70.67	2.82	100.24
scnpilot_solids1_trim150_scaffold_33418 Species: Curtobacterium flaccumfaciens (50%)	2	1218 bp	70.36	4.06	100.25
scnpilot_solids1_trim150_scaffold_34479 Species: Arthrobacter crystallopoietes (50%)	2	1191 bp	72.80	3.53	100.25
scnpilot_solids1_trim150_scaffold_35917 Species: Microbacterium azadirachtae (50%)	2	1155 bp	68.66	4.29	100.26
scnpilot_solids1_trim150_scaffold_35948 Species: Kocuria rhizophila (50%)	2	1155 bp	69.78	4.94	100.26
scnpilot_solids1_trim150_scaffold_24728 Species: Microbacterium sp. C448 (50%)	2	1514 bp	72.26	5.75	100.26
scnpilot_solids1_trim150_scaffold_40266 Species: Microbacterium sp. TS-1 (66.67%)	3	1062 bp	69.30	4.66	100.28
scnpilot_solids1_trim150_scaffold_27470 Species: Microbacterium ginsengisoli (50%)	2	1403 bp	68.85	5.24	100.29
scnpilot_solids1_trim150_scaffold_12720 Species: Microbacterium laevaniformans (50%)	2	2429 bp	68.18	4.38	100.29
scnpilot_solids1_trim150_scaffold_6939 Genus: Microbacterium (75%)	4	3787 bp	72.01	4.20	100.29
scnpilot_solids1_trim150_scaffold_11294 Species: Microbacterium oxydans (66.67%)	3	2644 bp	69.63	4.65	100.30
scnpilot_solids1_trim150_scaffold_13644 Order: Micrococcales (66.67%)	3	2312 bp	69.68	4.93	100.30
scnpilot_solids1_trim150_scaffold_30555 Species: Microbacterium sp. C448 (50%)	2	1301 bp	69.64	4.84	100.31
scnpilot_solids1_trim150_scaffold_8751 Species: Microbacterium testaceum (75%)	4	3184 bp	70.57	5.75	100.35
scnpilot_solids1_trim150_scaffold_40442 Species: Microbacterium oleivorans (50%)	2	1058 bp	70.89	4.54	100.38
scnpilot_solids1_trim150_scaffold_13113 Species: Beutenbergia cavernae (75%)	4	2379 bp	68.39	3.53	100.38
scnpilot_solids1_trim150_scaffold_42278 Species: Intrasporangium chromatireducens (50%)	2	1025 bp	69.46	3.66	100.39
scnpilot_solids1_trim150_scaffold_24916 Species: Arthrobacter phenanthrenivorans (100%)	3	1506 bp	69.12	4.78	100.40
scnpilot_solids1_trim150_scaffold_43645 Species: Microbacterium sp. CH12i (50%)	2	1001 bp	68.23	2.70	100.40
scnpilot_solids1_trim150_scaffold_16906 Species: Leifsonia xyli (50%)	2	1981 bp	67.79	5.38	100.40
scnpilot_solids1_trim150_scaffold_17099 Genus: Microbacterium (100%)	3	1966 bp	72.13	7.17	100.41
scnpilot_solids1_trim150_scaffold_20952 Genus: Microbacterium (100%)	3	1703 bp	71.58	5.64	100.41
scnpilot_solids1_trim150_scaffold_33478 Order: Micrococcales (66.67%)	3	1216 bp	67.85	6.04	100.41
scnpilot_solids1_trim150_scaffold_17646 Genus: Microbacterium (100%)	3	1921 bp	68.92	4.53	100.42
scnpilot_solids1_trim150_scaffold_30481 Species: Arthrobacter sp. FB24 (100%)	3	1303 bp	67.38	5.30	100.61
scnpilot_solids1_trim150_scaffold_31650 Species: Arthrobacter phenanthrenivorans (100%)	3	1267 bp	67.64	3.31	100.63
scnpilot_solids1_trim150_scaffold_33853 Species: Rothia dentocariosa (50%)	2	1207 bp	68.52	6.46	100.66
scnpilot_solids1_trim150_scaffold_35374 Order: Micrococcales (66.67%)	3	1168 bp	71.06	4.24	100.69
scnpilot_solids1_trim150_scaffold_43493 Species: Arthrobacter phenanthrenivorans (100%)	2	1004 bp	66.73	4.48	100.70
scnpilot_solids1_trim150_scaffold_26863 Species: Curtobacterium flaccumfaciens (50%)	2	1427 bp	69.31	5.36	100.70
scnpilot_solids1_trim150_scaffold_13238 Species: Microbacterium mangrovi (75%)	4	2361 bp	72.13	4.76	100.76
scnpilot_solids1_trim150_scaffold_43660 Species: Arthrobacter phenanthrenivorans (100%)	2	1001 bp	67.23	2.85	101.00
scnpilot_solids1_trim150_scaffold_18449 Genus: Microbacterium (100%)	3	1861 bp	69.69	6.21	101.08
scnpilot_solids1_trim150_scaffold_38141 Species: Arthrobacter chlorophenolicus (100%)	2	1105 bp	70.50	3.26	101.27
scnpilot_solids1_trim150_scaffold_16563 Genus: Arthrobacter (66.67%)	3	2010 bp	67.11	2.99	101.34
scnpilot_solids1_trim150_scaffold_26881 Genus: Microbacterium (100%)	3	1426 bp	70.69	5.26	101.40
scnpilot_solids1_trim150_scaffold_22514 Species: Intrasporangium chromatireducens (50%)	2	1620 bp	68.83	5.28	101.67
scnpilot_solids1_trim150_scaffold_32187 Species: Microbacterium mangrovi (50%)	2	1251 bp	70.34	6.12	102.40
scnpilot_solids1_trim150_scaffold_30636 Species: Microbacterium sp. SA39 (100%)	2	1760 bp	69.38	4.86	103.30
scnpilot_solids1_trim150_scaffold_31715 Genus: Microbacterium (66.67%)	3	1265 bp	71.38	4.15	104.35
scnpilot_solids1_trim150_scaffold_39287 Species: Microbacterium sp. C448 (66.67%)	3	1082 bp	68.76	5.55	104.81
scnpilot_solids1_trim150_scaffold_34633 Species: Arthrobacter phenanthrenivorans (50%)	2	1187 bp	71.02	4.04	107.41

Displaying items 951-1000 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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