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SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Flavobacteriales  →  Flavobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Flavobacteriales_1

Properties

Avg. coverage: 3.98 Longest contig: 8.96 Kbp Bin length: 1.35 Mbp GC content: 39.55 %
Contigs count: 814 Features count: 1745 rRNAs count: 0 tRNAs count: 8

Genome completeness

partial RP 15 / 55 BSCG 13 / 51 ASCG 2 / 38
Displaying items 451-500 of 814 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_33490
Species: Chryseobacterium indologenes (66.67%)
3 1216 bp 42.35 6.54 92.02
scnpilot_solids1_trim150_scaffold_24371
Species: Fluviicola taffensis (50%)
2 1529 bp 37.74 3.34 92.02
scnpilot_solids1_trim150_scaffold_10067
Species: Imtechella halotolerans (50%)
6 2875 bp 41.50 3.50 91.93
scnpilot_solids1_trim150_scaffold_42974
Species: Chryseobacterium formosense (50%)
2 1012 bp 40.12 2.96 91.90
scnpilot_solids1_trim150_scaffold_29732
Species: Capnocytophaga sputigena (50%)
2 1326 bp 30.54 3.17 91.86
scnpilot_solids1_trim150_scaffold_36643
Species: Flavobacterium beibuense (100%)
1 1140 bp 35.09 2.63 91.84
scnpilot_solids1_trim150_scaffold_38383
Species: R_Fluviicola_43_260 (50%)
2 1101 bp 41.05 2.45 91.83
scnpilot_solids1_trim150_scaffold_24661
Order: Flavobacteriales (100%)
3 1517 bp 29.80 3.56 91.76
scnpilot_solids1_trim150_scaffold_11663
Species: Chryseobacterium indologenes (66.67%)
6 2586 bp 33.91 6.90 91.65
scnpilot_solids1_trim150_scaffold_31269
Species: Flavobacterium sp. CF136 (100%)
1 1278 bp 48.12 3.05 91.55
scnpilot_solids1_trim150_scaffold_5089
Order: Flavobacteriales (50%)
4 4760 bp 37.12 4.92 91.45
scnpilot_solids1_trim150_scaffold_39103
Species: Chryseobacterium formosense (50%)
2 1086 bp 42.08 3.04 91.44
scnpilot_solids1_trim150_scaffold_13872
Species: Joostella marina (50%)
4 2284 bp 38.09 5.71 91.42
scnpilot_solids1_trim150_scaffold_16200
Species: Fluviicola taffensis (66.67%)
3 2041 bp 40.96 3.23 91.28
scnpilot_solids1_trim150_scaffold_22965
Species: R_Fluviicola_43_260 (50%)
2 1598 bp 39.55 3.00 91.24
scnpilot_solids1_trim150_scaffold_12692
Species: Epilithonimonas sp. FH1 (50%)
4 2432 bp 43.17 3.89 91.04
scnpilot_solids1_trim150_scaffold_42588
Species: R_Fluviicola_43_260 (50%)
2 1019 bp 36.51 2.80 90.97
scnpilot_solids1_trim150_scaffold_34490
Species: Capnocytophaga sp. oral taxon 338 (50%)
2 1191 bp 33.25 3.27 90.93
scnpilot_solids1_trim150_scaffold_13479
Species: R_Fluviicola_43_260 (66.67%)
3 2333 bp 39.56 3.21 90.91
scnpilot_solids1_trim150_scaffold_43259
Species: Flavobacterium hibernum (100%)
1 1007 bp 37.34 3.57 90.86
scnpilot_solids1_trim150_scaffold_26027
Species: Fluviicola taffensis (100%)
1 1460 bp 44.86 2.88 90.82
scnpilot_solids1_trim150_scaffold_36607
Species: Epilithonimonas sp. FH1 (100%)
1 1140 bp 31.58 5.00 90.79
scnpilot_solids1_trim150_scaffold_19814
Species: Fluviicola taffensis (50%)
2 1772 bp 40.63 2.62 90.74
scnpilot_solids1_trim150_scaffold_41665
Species: Fluviicola taffensis (50%)
2 1035 bp 37.00 2.90 90.72
scnpilot_solids1_trim150_scaffold_22541
Species: R_Fluviicola_43_260 (50%)
2 1619 bp 37.92 3.52 90.61
scnpilot_solids1_trim150_scaffold_10560
Species: Flavobacterium frigoris (50%)
2 2775 bp 35.42 4.65 90.59
scnpilot_solids1_trim150_scaffold_32168
Species: Chryseobacterium gleum (66.67%)
3 1252 bp 41.85 9.46 90.58
scnpilot_solids1_trim150_scaffold_28894
Species: Chryseobacterium jeonii (50%)
2 1352 bp 36.32 3.55 90.53
scnpilot_solids1_trim150_scaffold_23912
Species: Flavobacterium branchiophilum (50%)
2 1551 bp 38.36 4.26 90.52
scnpilot_solids1_trim150_scaffold_34233
Species: BJP_IG2102_Flavobacteriales_34_12 (50%)
2 1197 bp 37.43 4.01 90.48
scnpilot_solids1_trim150_scaffold_30876
Species: R_Fluviicola_43_260 (50%)
2 1290 bp 37.05 2.67 90.47
scnpilot_solids1_trim150_scaffold_6862
Species: Elizabethkingia miricola (80%)
5 3824 bp 38.68 5.45 90.46
scnpilot_solids1_trim150_scaffold_5472
Species: Fluviicola taffensis (50%)
6 4512 bp 38.12 4.45 90.43
scnpilot_solids1_trim150_scaffold_11908
Order: Flavobacteriales (50%)
4 2548 bp 35.24 4.77 90.42
scnpilot_solids1_trim150_scaffold_15799
Species: Flavobacterium beibuense (50%)
2 2081 bp 39.79 2.52 90.39
scnpilot_solids1_trim150_scaffold_37545
Species: Flavobacterium johnsoniae (50%)
2 1119 bp 44.06 4.56 90.35
scnpilot_solids1_trim150_scaffold_43515
Species: Owenweeksia hongkongensis (100%)
1 1003 bp 33.70 4.34 90.33
scnpilot_solids1_trim150_scaffold_34235
Species: Flavobacterium hydatis (50%)
2 1197 bp 45.45 2.76 90.23
scnpilot_solids1_trim150_scaffold_15754
Species: Flavobacteria bacterium BAL38 (50%)
2 2085 bp 46.09 3.17 90.22
scnpilot_solids1_trim150_scaffold_27636
Species: Fluviicola taffensis (50%)
2 1397 bp 40.01 4.29 90.19
scnpilot_solids1_trim150_scaffold_37104
Species: R_Fluviicola_43_260 (100%)
1 1129 bp 37.47 3.19 90.08
scnpilot_solids1_trim150_scaffold_7299
Order: Flavobacteriales (50%)
4 3640 bp 46.57 4.00 90.00
scnpilot_solids1_trim150_scaffold_29391
Order: Flavobacteriales (66.67%)
3 1337 bp 37.70 3.59 89.98
scnpilot_solids1_trim150_scaffold_17001
Species: Flavobacterium sp. EM1308 (50%)
4 1974 bp 41.54 2.58 89.97
scnpilot_solids1_trim150_scaffold_10279
Species: Formosa sp. AK20 (100%)
2 2831 bp 40.41 3.29 89.97
scnpilot_solids1_trim150_scaffold_15260
Species: Flavobacterium sp. CF136 (50%)
2 2132 bp 42.26 4.92 89.92
scnpilot_solids1_trim150_scaffold_30913
Species: Chryseobacterium sp. CF314 (50%)
2 1288 bp 44.02 3.49 89.91
scnpilot_solids1_trim150_scaffold_9525
Order: Flavobacteriales (50%)
4 2992 bp 37.37 6.07 89.84
scnpilot_solids1_trim150_scaffold_35895
Species: Polaribacter sp. Hel1_85 (100%)
1 1156 bp 35.81 4.15 89.79
scnpilot_solids1_trim150_scaffold_23032
Class: Flavobacteriia (66.67%)
3 1594 bp 40.46 4.23 89.77
Displaying items 451-500 of 814 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.