ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Flavobacteriales_1

Properties

Avg. coverage: 3.98 Longest contig: 8.96 Kbp Bin length: 1.35 Mbp GC content: 39.55 %

Contigs count: 814 Features count: 1745 rRNAs count: 0 tRNAs count: 8

Genome completeness

partial RP 15 / 55 BSCG 13 / 51 ASCG 2 / 38

Displaying items 1-50 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_37704 Species: R_Fluviicola_43_260 (50%)	2	1115 bp	37.49	2.15	107.62
scnpilot_solids1_trim150_scaffold_38773 Species: R_Fluviicola_43_260 (66.67%)	3	1093 bp	37.51	2.74	105.67
scnpilot_solids1_trim150_scaffold_28614 Species: Weeksella virosa (50%)	2	1362 bp	45.59	2.64	103.74
scnpilot_solids1_trim150_scaffold_43516 Species: R_Fluviicola_43_260 (50%)	2	1003 bp	40.18	3.59	102.89
scnpilot_solids1_trim150_scaffold_41207 Species: R_Fluviicola_43_260 (50%)	2	1044 bp	39.18	2.01	102.87
scnpilot_solids1_trim150_scaffold_13911 Genus: Flavobacterium (50%)	4	2280 bp	42.98	7.24	102.63
scnpilot_solids1_trim150_scaffold_17846 Class: Flavobacteriia (50%)	4	1906 bp	37.46	3.15	102.47
scnpilot_solids1_trim150_scaffold_25622 Species: R_Fluviicola_43_260 (50%)	2	1478 bp	44.25	4.06	102.10
scnpilot_solids1_trim150_scaffold_20487 Species: R_Fluviicola_43_260 (66.67%)	3	1732 bp	41.45	3.29	101.67
scnpilot_solids1_trim150_scaffold_22013 Species: Chryseobacterium sp. JM1 (50%)	2	1646 bp	44.59	3.74	101.52
scnpilot_solids1_trim150_scaffold_29491 Genus: Chryseobacterium (66.67%)	3	1334 bp	44.38	4.95	101.42
scnpilot_solids1_trim150_scaffold_33501 Species: Fluviicola taffensis (50%)	2	1216 bp	44.82	4.69	101.15
scnpilot_solids1_trim150_scaffold_14690 Species: Fluviicola taffensis (50%)	4	2195 bp	43.10	3.14	101.00
scnpilot_solids1_trim150_scaffold_34568 Species: Chryseobacterium soli (50%)	2	1189 bp	40.45	3.66	100.93
scnpilot_solids1_trim150_scaffold_32658 Species: Chryseobacterium jeonii (50%)	2	1238 bp	38.85	3.39	100.81
scnpilot_solids1_trim150_scaffold_30634 Species: Chryseobacterium sp. P1-3 (50%)	2	1298 bp	35.21	3.58	100.77
scnpilot_solids1_trim150_scaffold_10717 Species: Nonlabens dokdonensis (50%)	2	2744 bp	34.80	5.19	100.69
scnpilot_solids1_trim150_scaffold_35397 Species: Fluviicola taffensis (50%)	2	1168 bp	37.16	3.60	100.69
scnpilot_solids1_trim150_scaffold_25590 Species: Nonlabens dokdonensis (50%)	2	1478 bp	33.76	4.87	100.68
scnpilot_solids1_trim150_scaffold_36501 Species: Elizabethkingia miricola (50%)	2	1142 bp	39.40	2.89	100.61
scnpilot_solids1_trim150_scaffold_42004 Species: Epilithonimonas lactis (50%)	2	1029 bp	42.76	2.62	100.58
scnpilot_solids1_trim150_scaffold_13630 Genus: Flavobacterium (50%)	4	2313 bp	42.97	3.70	100.52
scnpilot_solids1_trim150_scaffold_39895 Species: Flavobacterium sp. AED (100%)	2	1069 bp	38.54	4.21	100.47
scnpilot_solids1_trim150_scaffold_42698 Species: Chryseobacterium sp. JM1 (100%)	2	1017 bp	42.08	3.54	100.30
scnpilot_solids1_trim150_scaffold_34228 Species: Flavobacterium sp. CF136 (50%)	2	1197 bp	44.86	4.51	100.25
scnpilot_solids1_trim150_scaffold_39885 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1069 bp	36.48	2.81	100.19
scnpilot_solids1_trim150_scaffold_37599 Species: Nonlabens ulvanivorans (50%)	2	1117 bp	39.93	3.22	100.18
scnpilot_solids1_trim150_scaffold_36267 Genus: Chryseobacterium (66.67%)	3	1147 bp	35.22	3.40	100.17
scnpilot_solids1_trim150_scaffold_20596 Species: Fluviicola taffensis (50%)	2	1725 bp	37.91	4.78	100.17
scnpilot_solids1_trim150_scaffold_33110 Species: Flavobacterium sp. F52 (50%)	2	1225 bp	48.08	3.43	100.16
scnpilot_solids1_trim150_scaffold_30685 Species: Imtechella halotolerans (50%)	2	1297 bp	34.93	2.54	100.15
scnpilot_solids1_trim150_scaffold_20789 Species: Flavobacterium branchiophilum (50%)	2	1714 bp	34.07	4.03	100.12
scnpilot_solids1_trim150_scaffold_38987 Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1088 bp	38.60	4.00	100.09
scnpilot_solids1_trim150_scaffold_36667 Species: Fluviicola taffensis (100%)	2	1139 bp	40.56	3.42	100.09
scnpilot_solids1_trim150_scaffold_21651 Species: Fluviicola taffensis (50%)	2	1664 bp	38.58	4.15	100.06
scnpilot_solids1_trim150_scaffold_19983 Species: Myroides profundi (50%)	2	1763 bp	40.56	3.40	100.06
scnpilot_solids1_trim150_scaffold_41049 Species: Zunongwangia profunda (100%)	1	1047 bp	48.90	2.72	100.00
scnpilot_solids1_trim150_scaffold_25798 Species: Chryseobacterium taiwanense (100%)	1	1470 bp	39.18	4.29	100.00
scnpilot_solids1_trim150_scaffold_40607 Species: Flavobacterium aquatile (100%)	1	1056 bp	39.20	3.13	100.00
scnpilot_solids1_trim150_scaffold_42378 Species: Fluviicola taffensis (100%)	1	1023 bp	45.45	2.35	100.00
scnpilot_solids1_trim150_scaffold_32749 Species: Leeuwenhoekiella blandensis (50%)	2	1236 bp	39.32	4.25	100.00
scnpilot_solids1_trim150_scaffold_40905 Species: R_Fluviicola_43_260 (100%)	1	1050 bp	39.90	3.43	100.00
scnpilot_solids1_trim150_scaffold_11937 Species: R_Fluviicola_43_260 (100%)	1	2544 bp	39.62	3.18	100.00
scnpilot_solids1_trim150_scaffold_42166 Species: Fluviicola taffensis (100%)	1	1026 bp	45.52	2.92	100.00
scnpilot_solids1_trim150_scaffold_36887 Species: R_Fluviicola_43_260 (100%)	1	1134 bp	37.92	2.51	100.00
scnpilot_solids1_trim150_scaffold_27289 Species: Formosa agariphila (100%)	1	1410 bp	36.88	3.62	100.00
scnpilot_solids1_trim150_scaffold_34593 Species: Algibacter lectus (100%)	1	1188 bp	36.53	3.54	100.00
scnpilot_solids1_trim150_scaffold_35563 Species: Schleiferia thermophila (50%)	2	1164 bp	31.87	2.84	100.00
scnpilot_solids1_trim150_scaffold_36195 Species: GWF1_Flavobacteria_32_7_curated (100%)	1	1149 bp	42.47	3.66	100.00
scnpilot_solids1_trim150_scaffold_19469 Species: Weeksella virosa (100%)	1	1794 bp	37.46	3.51	100.00

Displaying items 1-50 of 814 in total

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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