ggKbase home page

scnpilot_solids2_trim150_scaffold_2009_6

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_151

partial RP 30 / 55 MC: 3 BSCG 33 / 51 MC: 5 ASCG 8 / 38 MC: 1
Location: 3249..4259

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.6
  • Coverage: 332.0
  • Bit_score: 598
  • Evalue 5.00e-168
tRNA pseudouridine synthase D n=2 Tax=Rhodanobacter denitrificans RepID=M4NNZ0_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 332.0
  • Bit_score: 598
  • Evalue 3.60e-168
tRNA pseudouridine synthase, TruD family similarity KEGG
DB: KEGG
  • Identity: 88.6
  • Coverage: 332.0
  • Bit_score: 598
  • Evalue 1.10e-168

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1011
ATGCAAGAACTGCCCCATGCTTTCGGCGAACCGCCACTGACTGCCCGGCTGCGCGCCAGTCCCGAGGACTTCCTGGTCGAGGAGATCCTCGGCTACGACGCCGAGGGTGCCGGCGAGCACCTGCTGCTGTGGGTGGAGAAGCGCGGCGCCAACACCGACTGGGTCGCGCGCGAGCTGGCGAAGTTCGCCGGCGTGCCGCAGGTCGCGGTCGGTTATGCGGGCCTCAAGGATCGCCATGCCGTGACCCGGCAGACCTTCTCGGTGCAACTGGCCGGCCGGCCCGATCCGGACTGGTCCACGTTCCCGCACCCGGAGGTGAAAGTGCTGGCGGCGACGCGGCATTCGCGCAAGCTCAAGCGTGGCGCCCTGCGCGGCAACCGCTTCGTGCTGGTGTTGCGCGAGGTGAGCGGCGATCGCGCGCGGGCGGAGTCGGTGCTGCGGCAGATCGCTGCGCGCGGCGTGCCGAACTATTACGGCGAGCAGCGCTTCGGCCGCGAAGGCGGCAACGTGGCACAGGCGCGCGCGATGTTCGGTGGGCGCCGGGCGGATCGCGACAAGCGTTCGATTTTGCTGTCCGCGGCGCGTTCGCACATCTTCAATGCCGTACTGGCGGCGCGGGTCGAGCACGATGCGTGGGACCGGCCGCTGGAAGGGGAAATCTGGTCGCTGGCCGGTTCGCGCTCGTGGTTCGGGCCGGAACCGTTCAACGACGAATTGGCCGCGCGATTGGCGCGCGCCGACATCCATCCGTCAGGTCCGCTGTGGGGGCAGGGCGAGCCGCCGAGCCAGGGCGAAGCAGGAGCGCTGGAGCGCGAAGTCGCTGCGGCGAATGACGACCTGGCCAGCGGCCTGGCCGCCGCGCGCATGGATCAGGAGCGCCGCCCGCTGCGGCTGATTCCGCACAATCTCCACTGGCGCTGGCTTGGCGAGGACGCGCTGGAACTGTCGTTCGAGCTGCCCGCTGGCGCGTACGCCACGGTGGTGGTGCGCGAGCTTAAAGGCGAGGAGTGA
PROTEIN sequence
Length: 337
MQELPHAFGEPPLTARLRASPEDFLVEEILGYDAEGAGEHLLLWVEKRGANTDWVARELAKFAGVPQVAVGYAGLKDRHAVTRQTFSVQLAGRPDPDWSTFPHPEVKVLAATRHSRKLKRGALRGNRFVLVLREVSGDRARAESVLRQIAARGVPNYYGEQRFGREGGNVAQARAMFGGRRADRDKRSILLSAARSHIFNAVLAARVEHDAWDRPLEGEIWSLAGSRSWFGPEPFNDELAARLARADIHPSGPLWGQGEPPSQGEAGALEREVAAANDDLASGLAAARMDQERRPLRLIPHNLHWRWLGEDALELSFELPAGAYATVVVRELKGEE*