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scnpilot_solids2_trim150_scaffold_2009_13

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_151

partial RP 30 / 55 MC: 3 BSCG 33 / 51 MC: 5 ASCG 8 / 38 MC: 1
Location: comp(8548..8892)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA-binding protein containing KH domain, possibly ribosomal protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR54_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 87.8
  • Coverage: 98.0
  • Bit_score: 170
  • Evalue 8.20e-40
putative RNA-binding protein, YhbY family similarity KEGG
DB: KEGG
  • Identity: 87.8
  • Coverage: 98.0
  • Bit_score: 170
  • Evalue 2.60e-40
Putative RNA-binding protein, YhbY family {ECO:0000313|EMBL:AGG89374.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.8
  • Coverage: 98.0
  • Bit_score: 170
  • Evalue 1.10e-39

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Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 345
TTGCATGATACCCTGTGCAGTCCCTTGATCGTGAACCTGGCCTGCCCCATGCCGCTTACACCCTCGCAGATCCGCTACCTGCGCGGCCTCGCCCACGACGTGAAACCCGTCGTGTTGCTGGGCAACAAGGGCGCCACCGAAGCTGTCGTGAAGGAGCTGGGACAGGCGCTGGACATCCACGAACTGGTGAAGGTGAAGCTCTCCGGCGGCGACAAGCAGGAGCGGCAGGCGCAGATCGACGTGCTCGCCAGCGGCACCGGCGCGGAGACGATCCACCAGATCGGCCATGTCGTGGTGCTGTTCCGCCGCAACGCCGACGAACCGGGCATCGCCCTGCCGCGCTGA
PROTEIN sequence
Length: 115
LHDTLCSPLIVNLACPMPLTPSQIRYLRGLAHDVKPVVLLGNKGATEAVVKELGQALDIHELVKVKLSGGDKQERQAQIDVLASGTGAETIHQIGHVVVLFRRNADEPGIALPR*