ggKbase home page

scnpilot_solids2_trim150_scaffold_6685_4

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_151

partial RP 30 / 55 MC: 3 BSCG 33 / 51 MC: 5 ASCG 8 / 38 MC: 1
Location: 3040..3759

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WYC2_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 77.3
  • Coverage: 211.0
  • Bit_score: 308
  • Evalue 5.20e-81
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 76.8
  • Coverage: 211.0
  • Bit_score: 304
  • Evalue 4.00e-80
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 75.2
  • Coverage: 222.0
  • Bit_score: 311
  • Evalue 8.70e-82

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFOXYA1_FULL_Rhodanobacter_67_6_curated → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 720
ATGGATTCGCAAACCGCCCTGTTTCAGCAACACCGCCAGCGCCTGTTCGGTCTGGCCTACCGCATGCTCGGCACGCCCGCCGACGCCGAGGACGTGCTGCACGATGCCTGGCTGCGCTGGCACGCACAGAATGTCGCCGCGCTGGACGACCCGGAAGCCTGGCTGGTCACCGTGACCACGCGCATCGCGCTGGATCGCCTGCGCCGGGCCAAGACCGAACGCGCGCACTTGGAAATCAGCGAAGACGCCTGCCGCCAGCGCGTGCACCGGGCGAAGCAGCGGCTGCGCGAGGATCGACCGCGCCAGACGATGCCGAACGCCGACATCCAGCGGCGCCTGCTCGAACGCTTCATGCAGGCGCTGCAGCAGCCGGACATGCCCACGTTGCGTGCCTTGTTTACCGAAGACGCCATGAGCGTATCCGACGGCGGCGGCCTGGCGCGGGCCACCCTGCACCCGCTGCACGGCGCCGAGCGGCTGGCCCGGCTGTACATGCAGATCGCGCTGCAGCAGCAGCGCCATGGTGGCGTGCGCCACGAAATCCGTCAGCTCAACGGTACGCCGGCCCTGTTCGGCTGGCAGGGCGACACGCTGGTCTCGGCCAGCTGGATCGACGACGACGGCGAACGCATCACCGCGGTGCATGCCCTGCGCCACCCCGGCAAGCTTGCCCGGCTGGCGGCGGTCACGAAATCGACGGCGCCCACGTCCTTGCACTGA
PROTEIN sequence
Length: 240
MDSQTALFQQHRQRLFGLAYRMLGTPADAEDVLHDAWLRWHAQNVAALDDPEAWLVTVTTRIALDRLRRAKTERAHLEISEDACRQRVHRAKQRLREDRPRQTMPNADIQRRLLERFMQALQQPDMPTLRALFTEDAMSVSDGGGLARATLHPLHGAERLARLYMQIALQQQRHGGVRHEIRQLNGTPALFGWQGDTLVSASWIDDDGERITAVHALRHPGKLARLAAVTKSTAPTSLH*