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scnpilot_solids2_trim150_scaffold_3411_3

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_69_103

partial RP 27 / 55 MC: 1 BSCG 30 / 51 MC: 5 ASCG 7 / 38 MC: 2
Location: 1742..2029

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Rhodanobacter denitrificans RepID=I4WV78_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 97.9
  • Coverage: 95.0
  • Bit_score: 188
  • Evalue 4.10e-45
RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 96.8
  • Coverage: 95.0
  • Bit_score: 186
  • Evalue 3.80e-45
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.8
  • Coverage: 95.0
  • Bit_score: 186
  • Evalue 1.70e-44

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Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 288
ATGTCCAAGGGGCAGTCGTTGCAGGATCCGTTTCTGAATGCATTGCGGCGCGAGCGCGTGCCGGTGGCCATCTACCTGGTCAACGGCATCAAGTTGCAGGGCACGGTCGAATCGTTCGACCAATTCGTGGTGTTGCTGCGCAACCAGGTGAGCCAGATGGTCTACAAGCACGCCATCTCCACCGTGGTGCCGAGCCGCAACGTGCGCATCGGCAATGGCCATGACGGCCATGAGGGCCACGAGCATCCGTCCGACGCATCGGCCGCTTCTGCCGACGCGGACGCTTGA
PROTEIN sequence
Length: 96
MSKGQSLQDPFLNALRRERVPVAIYLVNGIKLQGTVESFDQFVVLLRNQVSQMVYKHAISTVVPSRNVRIGNGHDGHEGHEHPSDASAASADADA*