ggKbase home page

ACD12_244_7

Organism: ACD12

megabin RP 52 / 55 MC: 37 BSCG 46 / 51 MC: 26 ASCG 0 / 38
Location: comp(4759..5070)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily (db=KEGG evalue=1.0e-08 bit_score=62.0 identity=31.08 coverage=68.2692307692308) similarity KEGG
DB: KEGG
  • Identity: 31.08
  • Coverage: 68.27
  • Bit_score: 62
  • Evalue 1.00e-08
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=75 evalue=6.6e-12 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 6.60e-12
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=25 to=75 evalue=2.6e-08 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.60e-08

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

OP11_GWA2_32_13 → Roizmanbacteria → Microgenomates → Bacteria

Sequences

DNA sequence
Length: 312
ATGGCTGGAATATCTGATAAAGACGTAATTAAAAAAATAAGGAACGGGAAAATAGACCAATATTCTTATATTGTTAAAAAATATACTACTTCGATGTATCGATACATCGAAAAAAAATTATTTAATAAAGAAGATGTTGACGATTTGGTACAAAACGTTTTCATTTCTTTTTATAAGGCCATCGAAAAATTTGATGAGAAAAGGCCAGTCAGGCCGTACTTATTTCAGNNNNNNNNNNTAAAAAATATACTACTTCGATGTATCGATACATCGAAAGAAGGCTTTTTAAAAAAGAAGAAACAGATGATTTAG
PROTEIN sequence
Length: 104
MAGISDKDVIKKIRNGKIDQYSYIVKKYTTSMYRYIEKKLFNKEDVDDLVQNVFISFYKAIEKFDEKRPVRPYLFQXXXXKNILLRCIDTSKEGFLKKKKQMI*