Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
GreA/GreB family elongation factor | similarity |
KEGG
DB: KEGG |
57.3 | 157.0 | 170 | 4.10e-40 | tjr:TherJR_0229 |
seg (db=Seg db_id=seg from=12 to=29) | iprscan |
interpro
DB: Seg |
null | null | null | null | tjr:TherJR_0229 |
seg (db=Seg db_id=seg from=131 to=142) | iprscan |
interpro
DB: Seg |
null | null | null | null | tjr:TherJR_0229 |
coiled-coil (db=Coil db_id=coil from=12 to=33 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | tjr:TherJR_0229 |
GREAB_2 (db=PatternScan db_id=PS00830 from=120 to=136 evalue=0.0 interpro_id=IPR018151 interpro_description=Transcription elongation factor, GreA/GreB, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | tjr:TherJR_0229 |
greA: transcription elongation factor GreA (db=HMMTigr db_id=TIGR01462 from=6 to=155 evalue=3.0e-66 interpro_id=IPR006359 interpro_description=Transcription elongation factor GreA GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 3.00e-66 | tjr:TherJR_0229 |
GreA_GreB_N (db=HMMPfam db_id=PF03449 from=1 to=75 evalue=1.6e-24 interpro_id=IPR022691 interpro_description=Transcription elongation factor, GreA/GreB, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.60e-24 | tjr:TherJR_0229 |
GreA_GreB (db=HMMPfam db_id=PF01272 from=84 to=155 evalue=8.4e-24 interpro_id=IPR001437 interpro_description=Transcription elongation factor, GreA/GreB, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.40e-24 | tjr:TherJR_0229 |
GreA transcript cleavage protein, N-terminal domain (db=superfamily db_id=SSF46557 from=3 to=80 evalue=2.0e-23 interpro_id=IPR022691 interpro_description=Transcription elongation factor, GreA/GreB, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.00e-23 | tjr:TherJR_0229 |
no description (db=Gene3D db_id=G3DSA:1.10.287.180 from=2 to=76 evalue=2.2e-21 interpro_id=IPR022691 interpro_description=Transcription elongation factor, GreA/GreB, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: Gene3D |
null | null | null | 2.20e-21 | tjr:TherJR_0229 |
FKBP-like (db=superfamily db_id=SSF54534 from=81 to=154 evalue=4.6e-19) | iprscan |
interpro
DB: superfamily |
null | null | null | 4.60e-19 | tjr:TherJR_0229 |
no description (db=Gene3D db_id=G3DSA:3.10.50.30 from=77 to=154 evalue=1.4e-16 interpro_id=IPR001437 interpro_description=Transcription elongation factor, GreA/GreB, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: Gene3D |
null | null | null | 1.40e-16 | tjr:TherJR_0229 |
GreA_GreB (db=HAMAP db_id=MF_00105 from=2 to=155 evalue=22.182) | iprscan |
interpro
DB: HAMAP |
null | null | null | 2.22e+01 | tjr:TherJR_0229 |
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=77133 species="Bacteria; |
UNIPROT
DB: UniProtKB |
100.0 | 155.0 | 304 | 1.20e-79 | K2CJT8_9BACT | |
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA alias=ACD37_C00162G00002,ACD37_500188.4918.6G0002,ACD37_500188.4918.6_2 id=42002 tax=ACD37 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OP11 organism_desc=OP11 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 303 | 3.40e-80 | tjr:TherJR_0229 |