Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8) | rbh |
KEGG
DB: KEGG |
45.4 | 775.0 | 644 | 4.80e-182 | sti:Sthe_1553 |
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8) | similarity |
KEGG
DB: KEGG |
45.4 | 775.0 | 644 | 4.80e-182 | sti:Sthe_1553 |
Polyribonucleotide nucleotidyltransferase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=PNP_THERP (db=UNIREF evalue=4.0e-164 bit_score=582.0 identity=46.43 coverage=88.2276843467012) | similarity |
UNIREF
DB: UNIREF |
46.43 | 88.23 | 582 | 4.00e-164 | sti:Sthe_1553 |
seg (db=Seg db_id=seg from=237 to=248) | iprscan |
interpro
DB: Seg |
null | null | null | null | sti:Sthe_1553 |
seg (db=Seg db_id=seg from=698 to=717) | iprscan |
interpro
DB: Seg |
null | null | null | null | sti:Sthe_1553 |
seg (db=Seg db_id=seg from=566 to=581) | iprscan |
interpro
DB: Seg |
null | null | null | null | sti:Sthe_1553 |
seg (db=Seg db_id=seg from=131 to=144) | iprscan |
interpro
DB: Seg |
null | null | null | null | sti:Sthe_1553 |
seg (db=Seg db_id=seg from=719 to=772) | iprscan |
interpro
DB: Seg |
null | null | null | null | sti:Sthe_1553 |
polynuc_phos: polyribonucleotide nucleot (db=HMMTigr db_id=TIGR03591 from=10 to=691 evalue=0.0 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 0.0 | sti:Sthe_1553 |
Polyribonucleotide nucleotidyltransferase (db=HMMPIR db_id=PIRSF005499 from=1 to=713 evalue=1.6e-278 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402)) | iprscan |
interpro
DB: HMMPIR |
null | null | null | 1.60e-278 | sti:Sthe_1553 |
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (db=HMMPanther db_id=PTHR11252 from=146 to=718 evalue=5.3e-184 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402)) | iprscan |
interpro
DB: HMMPanther |
null | null | null | 5.30e-184 | sti:Sthe_1553 |
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=314 to=466 evalue=5.6e-42 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.60e-42 | sti:Sthe_1553 |
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=1 to=145 evalue=8.2e-40 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold) | iprscan |
interpro
DB: superfamily |
null | null | null | 8.20e-40 | sti:Sthe_1553 |
Ribonuclease PH domain 2-like (db=superfamily db_id=SSF55666 from=139 to=233 evalue=2.2e-23 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.20e-23 | sti:Sthe_1553 |
no description (db=HMMSmart db_id=SM00316 from=621 to=691 evalue=2.7e-23) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 2.70e-23 | sti:Sthe_1553 |
Ribonuclease PH domain 2-like (db=superfamily db_id=SSF55666 from=455 to=561 evalue=3.7e-23 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.70e-23 | sti:Sthe_1553 |
Eukaryotic type KH-domain (KH-domain type I) (db=superfamily db_id=SSF54791 from=541 to=637 evalue=5.7e-22) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.70e-22 | sti:Sthe_1553 |
RNase_PH (db=HMMPfam db_id=PF01138 from=323 to=458 evalue=8.5e-21 interpro_id=IPR001247 interpro_description=Exoribonuclease, phosphorolytic domain 1 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.50e-21 | sti:Sthe_1553 |
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=620 to=690 evalue=2.4e-19 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.40e-19 | sti:Sthe_1553 |
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=618 to=691 evalue=5.2e-18 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold) | iprscan |
interpro
DB: Gene3D |
null | null | null | 5.20e-18 | sti:Sthe_1553 |
RNase_PH (db=HMMPfam db_id=PF01138 from=13 to=145 evalue=9.0e-17 interpro_id=IPR001247 interpro_description=Exoribonuclease, phosphorolytic domain 1 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 9.00e-17 | sti:Sthe_1553 |
S1 (db=HMMPfam db_id=PF00575 from=620 to=689 evalue=1.4e-16 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.40e-16 | sti:Sthe_1553 |
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 (db=superfamily db_id=SSF46915 from=227 to=326 evalue=4.4e-15 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: superfamily |
null | null | null | 4.40e-15 | sti:Sthe_1553 |
KH_1 (db=HMMPfam db_id=PF00013 from=559 to=612 evalue=4.6e-13 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 4.60e-13 | sti:Sthe_1553 |
no description (db=HMMSmart db_id=SM00322 from=553 to=618 evalue=7.7e-13 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 7.70e-13 | sti:Sthe_1553 |
RNase_PH_C (db=HMMPfam db_id=PF03725 from=148 to=211 evalue=1.3e-10 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.30e-10 | sti:Sthe_1553 |
PNPase (db=HMMPfam db_id=PF03726 from=245 to=319 evalue=6.9e-08 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.90e-08 | sti:Sthe_1553 |
RNase_PH_C (db=HMMPfam db_id=PF03725 from=462 to=531 evalue=2.2e-06 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.20e-06 | sti:Sthe_1553 |
no description (db=Gene3D db_id=G3DSA:1.10.10.400 from=240 to=319 evalue=0.00027 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: Gene3D |
null | null | null | 2.70e-04 | sti:Sthe_1553 |
no description (db=Gene3D db_id=G3DSA:3.30.1370.10 from=551 to=618 evalue=0.00047) | iprscan |
interpro
DB: Gene3D |
null | null | null | 4.70e-04 | sti:Sthe_1553 |
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=554 to=613 evalue=13.816 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: ProfileScan |
null | null | null | 1.38e+01 | sti:Sthe_1553 |
S1 (db=ProfileScan db_id=PS50126 from=623 to=691 evalue=18.806 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: ProfileScan |
null | null | null | 1.88e+01 | sti:Sthe_1553 |
PNPase (db=HAMAP db_id=MF_01595 from=3 to=694 evalue=25.563 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402)) | iprscan |
interpro
DB: HAMAP |
null | null | null | 2.56e+01 | sti:Sthe_1553 |
tro:trd_0623 polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] alias=ACD38_C00009G00010,ACD38_61442.47416.10G0010,ACD38_61442.47416.10_10 id=43198 tax=ACD38 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi organism_group=OP11 organism_desc=OP11 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 1505 | 0.0 | sti:Sthe_1553 |
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated |
UNIPROT
DB: UniProtKB |
100.0 | 772.0 | 1505 | 0.0 | ggdbv1_87869224 |