ggKbase home page

scnpilot_solids1_trim150_scaffold_15198_curated_3

Organism: solids_Lysobacter_1

partial RP 26 / 55 MC: 1 BSCG 26 / 51 ASCG 2 / 38
Location: comp(429..1151)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding S4 domain-containing protein; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] similarity KEGG
DB: KEGG
  • Identity: 64.2
  • Coverage: 240.0
  • Bit_score: 305
  • Evalue 1.40e-80
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003669551 similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 240.0
  • Bit_score: 395
  • Evalue 3.30e-107
RNA-binding protein S4 {ECO:0000313|EMBL:AKC87110.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.4
  • Coverage: 245.0
  • Bit_score: 351
  • Evalue 7.60e-94

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudoxanthomonas suwonensis → Pseudoxanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 723
ATGTCCGATTCCGTACGACTGGCCAAACGCGTGGCCGAGCTGGCCGCCTGCTCGCGCGCCGACGCGGAGCAATACATCCGCAACGGCTGGGTGCAGGTCGACGGGTGCGTGGTCGAGAATCCCGCGCACGCGGTGTCCCGCGAGACAGTGACGCTGGATGAGGAGGCGCGGCTGGAGGCCGTGGAACCGGCCACCGTGCTGCTGCACAAGCCGGTGGGCTACGACACCATCAGCGGGCCCAACCCCGCCGCCGCCCTGGTGCAGCCCGGCACCCGCTGGCCCGAAGACCCTTCCGGCGTGCGCATGCTGGAGCGCCATTTCCACCGCCTGACCCCGCTGGTGCCCCTGGATATCGACGCCAGCGGCTTGATGGTACTGACCCAGGACGGGCGGGTGTGGCGCCGCCTCACCGAGGACGGCGACGGGATCGAACAGGAATACGTGGTCGAGGTCAGCGGCGACATCGCCCCTTATGGCCTGCGCAAGCTCAACCACGGCCTGCACTACAACGGCCGCGCGCTGCCGCCGTGCAAGGTCAGCTGGCAGAACGAAGTACGCCTGCGTTTTGCCCTGAAGGGCGTGCAGGGCGGGCAGCTGCGCGACATGTGCGCGCAGGTCGGGCTGGAAGTGGTGTCGATCCGCCGCCTGCGGATCGGCAAGATCCCGCTGGCGAAGATGCCGGTGGGCACATGGCGCTACCTGCCGGTGGGCGAGCGGTTCTAG
PROTEIN sequence
Length: 241
MSDSVRLAKRVAELAACSRADAEQYIRNGWVQVDGCVVENPAHAVSRETVTLDEEARLEAVEPATVLLHKPVGYDTISGPNPAAALVQPGTRWPEDPSGVRMLERHFHRLTPLVPLDIDASGLMVLTQDGRVWRRLTEDGDGIEQEYVVEVSGDIAPYGLRKLNHGLHYNGRALPPCKVSWQNEVRLRFALKGVQGGQLRDMCAQVGLEVVSIRRLRIGKIPLAKMPVGTWRYLPVGERF*