ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

Properties

Avg. coverage: 1.00 Longest contig: 8.49 Kbp Bin length: 1.84 Mbp GC content: 68.98 %

Contigs count: 1001 Features count: 2511 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 BSCG 24 / 51 MC: 2 ASCG 8 / 38

Displaying items 451-500 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_28890_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1240 bp	67.42	1.00	89.27
scnpilot_solids1_trim150_scaffold_41749_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1030 bp	66.41	1.00	82.43
scnpilot_solids1_trim150_scaffold_36042_curated Species: Microbacterium sp. MRS-1 (50%)	2	1143 bp	70.17	1.00	98.95
scnpilot_solids1_trim150_scaffold_21520_curated Species: Leifsonia aquatica (50%)	2	1658 bp	70.08	1.00	87.03
scnpilot_solids1_trim150_scaffold_40378_curated Species: Microbacterium ginsengisoli (50%)	2	1057 bp	72.56	1.00	84.58
scnpilot_solids1_trim150_scaffold_32248_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1246 bp	67.58	1.00	96.79
scnpilot_solids1_trim150_scaffold_16995_curated Species: Microbacterium sp. MRS-1 (50%)	2	1971 bp	72.70	1.00	94.98
scnpilot_solids1_trim150_scaffold_22963_curated Species: Microbacterium sp. SUBG005 (50%)	2	1584 bp	71.28	1.00	94.13
scnpilot_solids1_trim150_scaffold_34399_curated Species: Microbacterium mangrovi (50%)	2	1190 bp	72.02	1.00	97.31
scnpilot_solids1_trim150_scaffold_40278_curated Species: Microbacterium mangrovi (50%)	2	1035 bp	67.15	1.00	76.52
scnpilot_solids1_trim150_scaffold_23171_curated Species: Microbacterium sp. CH12i (50%)	2	1584 bp	71.21	1.00	94.32
scnpilot_solids1_trim150_scaffold_30412_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1277 bp	67.19	1.00	94.68
scnpilot_solids1_trim150_scaffold_39007_curated Species: Arthrobacter phenanthrenivorans (100%)	2	854 bp	67.45	1.00	98.36
scnpilot_solids1_trim150_scaffold_27893_curated Species: Microbacterium sp. SA39 (100%)	2	1266 bp	71.64	1.00	100.00
scnpilot_solids1_trim150_scaffold_19567_curated Species: Microbacterium oleivorans (50%)	2	1769 bp	70.44	1.00	78.35
scnpilot_solids1_trim150_scaffold_27837_curated Species: Microbacterium azadirachtae (50%)	2	1248 bp	71.96	1.00	100.24
scnpilot_solids1_trim150_scaffold_38715_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1042 bp	68.23	1.00	86.66
scnpilot_solids1_trim150_scaffold_31956_curated Species: Microbacterium azadirachtae (50%)	2	1002 bp	62.77	1.00	88.02
scnpilot_solids1_trim150_scaffold_32245_curated Species: Microbacterium ginsengisoli (50%)	2	1204 bp	68.02	1.00	91.69
scnpilot_solids1_trim150_scaffold_25722_curated Species: Microbacterium ginsengisoli (50%)	2	1471 bp	69.27	1.00	87.29
scnpilot_solids1_trim150_scaffold_18043_curated Species: Arthrobacter globiformis (50%)	2	1889 bp	69.67	1.00	100.05
scnpilot_solids1_trim150_scaffold_41915_curated Species: Microbacterium mangrovi (50%)	2	1027 bp	69.23	1.00	84.71
scnpilot_solids1_trim150_scaffold_18594_curated Species: Microbacterium sp. SA39 (50%)	2	1847 bp	68.81	1.00	93.23
scnpilot_solids1_trim150_scaffold_31966_curated Species: Corynebacterium glyciniphilum (50%)	2	1131 bp	67.99	1.00	65.25
scnpilot_solids1_trim150_scaffold_26640_curated Species: Microbacterium mangrovi (50%)	2	1976 bp	66.09	1.00	82.29
scnpilot_solids1_trim150_scaffold_22695_curated Species: Microbacterium mangrovi (50%)	2	1608 bp	68.91	1.00	93.28
scnpilot_solids1_trim150_scaffold_10613_curated Species: Leifsonia xyli (50%)	2	2740 bp	70.11	1.00	56.28
scnpilot_solids1_trim150_scaffold_27351_curated Species: Microbacterium mangrovi (100%)	2	1405 bp	68.61	1.00	84.56
scnpilot_solids1_trim150_scaffold_37067_curated Species: Rathayibacter toxicus (50%)	2	1127 bp	68.50	1.00	75.33
scnpilot_solids1_trim150_scaffold_38558_curated Species: Microbacterium sp. SA39 (50%)	2	1094 bp	71.57	1.00	88.03
scnpilot_solids1_trim150_scaffold_16446_curated Species: Microbacterium oxydans (50%)	2	1573 bp	71.84	1.00	88.30
scnpilot_solids1_trim150_scaffold_30820_curated Species: Microbacterium mangrovi (50%)	2	1289 bp	70.13	1.00	81.23
scnpilot_solids1_trim150_scaffold_14188_curated Species: Microbacterium hominis (50%)	2	2156 bp	63.91	1.00	52.74
scnpilot_solids1_trim150_scaffold_24707_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1512 bp	69.64	1.00	95.04
scnpilot_solids1_trim150_scaffold_13246_curated Species: Microbacterium sp. C448 (50%)	2	2357 bp	71.23	1.00	90.11
scnpilot_solids1_trim150_scaffold_21885_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1559 bp	70.69	1.00	57.34
scnpilot_solids1_trim150_scaffold_25578_curated Species: Microbacterium mangrovi (100%)	2	1476 bp	72.15	1.00	100.20
scnpilot_solids1_trim150_scaffold_38062_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1104 bp	68.48	1.00	98.10
scnpilot_solids1_trim150_scaffold_36396_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1128 bp	67.02	1.00	94.15
scnpilot_solids1_trim150_scaffold_21556_curated Species: Microbacterium mangrovi (100%)	2	1452 bp	68.94	1.00	100.21
scnpilot_solids1_trim150_scaffold_26575_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1435 bp	67.18	1.00	93.03
scnpilot_solids1_trim150_scaffold_18277_curated Species: Microbacterium ginsengisoli (100%)	2	1872 bp	68.43	1.00	100.00
scnpilot_solids1_trim150_scaffold_40743_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1049 bp	68.26	1.00	87.23
scnpilot_solids1_trim150_scaffold_24439_curated Species: Microbacterium sp. TS-1 (50%)	2	1523 bp	71.37	1.00	96.32
scnpilot_solids1_trim150_scaffold_21566_curated Species: Microbacterium sp. C448 (50%)	2	1605 bp	67.23	1.00	95.14
scnpilot_solids1_trim150_scaffold_38167_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1102 bp	67.42	1.00	99.09
scnpilot_solids1_trim150_scaffold_40824_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1048 bp	67.46	1.00	96.47
scnpilot_solids1_trim150_scaffold_12720_curated Species: Microbacterium laevaniformans (50%)	2	2426 bp	68.18	1.00	100.29
scnpilot_solids1_trim150_scaffold_23587_curated Species: Microbacterium ginsengisoli (50%)	2	1566 bp	70.18	1.00	100.00
scnpilot_solids1_trim150_scaffold_13879_curated Species: Kribbella flavida (50%)	2	2100 bp	67.14	1.00	74.57

Displaying items 451-500 of 1001 in total

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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