ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

Properties

Avg. coverage: 1.00 Longest contig: 8.49 Kbp Bin length: 1.84 Mbp GC content: 68.98 %

Contigs count: 1001 Features count: 2511 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 BSCG 24 / 51 MC: 2 ASCG 8 / 38

Displaying items 901-950 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_38959_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1086 bp	65.84	1.00	100.00
scnpilot_solids1_trim150_scaffold_25564_curated Species: Microbacterium mangrovi (50%)	2	1236 bp	70.95	1.00	100.00
scnpilot_solids1_trim150_scaffold_32680_curated Species: Microbacterium sp. SA39 (100%)	2	1194 bp	67.92	1.00	100.00
scnpilot_solids1_trim150_scaffold_28676_curated Species: Arthrobacter phenanthrenivorans (100%)	1	1266 bp	68.72	1.00	100.00
scnpilot_solids1_trim150_scaffold_26454_curated Species: Microbacterium mangrovi (100%)	2	1440 bp	70.49	1.00	100.00
scnpilot_solids1_trim150_scaffold_33226_curated Species: Arthrobacter phenanthrenivorans (100%)	1	1005 bp	70.45	1.00	100.00
scnpilot_solids1_trim150_scaffold_38738_curated Species: Intrasporangium chromatireducens (100%)	2	972 bp	71.91	1.00	100.00
scnpilot_solids1_trim150_scaffold_34115_curated Species: Microbacterium testaceum (100%)	1	1197 bp	68.09	1.00	100.00
scnpilot_solids1_trim150_scaffold_42349_curated Species: Arthrobacter chlorophenolicus (100%)	1	1020 bp	66.86	1.00	100.00
scnpilot_solids1_trim150_scaffold_12584_curated Species: Microbacterium sp. TS-1 (100%)	1	2445 bp	72.39	1.00	100.00
scnpilot_solids1_trim150_scaffold_39285_curated Species: Arthrobacter phenanthrenivorans (100%)	1	1071 bp	66.48	1.00	100.00
scnpilot_solids1_trim150_scaffold_36647_curated Species: Arthrobacter phenanthrenivorans (100%)	1	1137 bp	67.55	1.00	100.00
scnpilot_solids1_trim150_scaffold_13381_curated Species: Leifsonia aquatica (50%)	2	2237 bp	71.70	1.00	100.05
scnpilot_solids1_trim150_scaffold_15453_curated Species: Arthrobacter sp. PAMC25486 (50%)	2	2111 bp	67.17	1.00	100.05
scnpilot_solids1_trim150_scaffold_18043_curated Species: Arthrobacter globiformis (50%)	2	1889 bp	69.67	1.00	100.05
scnpilot_solids1_trim150_scaffold_19126_curated Species: Leifsonia aquatica (100%)	2	1814 bp	71.61	1.00	100.06
scnpilot_solids1_trim150_scaffold_20524_curated Species: Arthrobacter chlorophenolicus (66.67%)	3	1727 bp	68.96	1.00	100.06
scnpilot_solids1_trim150_scaffold_7934_curated Species: Microbacterium mangrovi (50%)	2	3385 bp	71.67	1.00	100.06
scnpilot_solids1_trim150_scaffold_22214_curated Species: Microbacterium sp. TS-1 (50%)	2	1631 bp	68.49	1.00	100.06
scnpilot_solids1_trim150_scaffold_20927_curated Species: Microbacterium sp. oral taxon 186 (50%)	2	1625 bp	67.26	1.00	100.06
scnpilot_solids1_trim150_scaffold_8869_curated Species: Microbacterium mangrovi (100%)	4	3151 bp	71.79	1.00	100.06
scnpilot_solids1_trim150_scaffold_26245_curated Species: Microbacterium sp. SUBG005 (50%)	2	1436 bp	69.29	1.00	100.07
scnpilot_solids1_trim150_scaffold_29282_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1337 bp	69.26	1.00	100.08
scnpilot_solids1_trim150_scaffold_29915_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1265 bp	69.17	1.00	100.08
scnpilot_solids1_trim150_scaffold_34507_curated Species: Microbacterium sp. C448 (100%)	2	1187 bp	70.26	1.00	100.08
scnpilot_solids1_trim150_scaffold_36692_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1136 bp	67.43	1.00	100.09
scnpilot_solids1_trim150_scaffold_34697_curated Species: Arthrobacter sp. AK-YN10 (50%)	2	1103 bp	67.45	1.00	100.09
scnpilot_solids1_trim150_scaffold_40665_curated Species: Microbacterium sp. C448 (50%)	2	1052 bp	69.77	1.00	100.10
scnpilot_solids1_trim150_scaffold_15657_curated Species: Microbacterium mangrovi (100%)	2	2092 bp	68.55	1.00	100.10
scnpilot_solids1_trim150_scaffold_15523_curated Species: Microbacterium mangrovi (100%)	2	2080 bp	70.87	1.00	100.10
scnpilot_solids1_trim150_scaffold_31832_curated Species: Leifsonia aquatica (50%)	2	956 bp	69.67	1.00	100.11
scnpilot_solids1_trim150_scaffold_19664_curated Species: Microbacterium foliorum (50%)	2	1777 bp	72.14	1.00	100.11
scnpilot_solids1_trim150_scaffold_18982_curated Species: Microbacterium testaceum (50%)	2	1774 bp	68.71	1.00	100.11
scnpilot_solids1_trim150_scaffold_21505_curated Species: Microbacterium oxydans (50%)	2	1657 bp	69.95	1.00	100.12
scnpilot_solids1_trim150_scaffold_24756_curated Species: Arthrobacter sp. AK-YN10 (100%)	2	1510 bp	65.83	1.00	100.13
scnpilot_solids1_trim150_scaffold_26742_curated Species: Arthrobacter sp. FB24 (100%)	2	1429 bp	71.94	1.00	100.14
scnpilot_solids1_trim150_scaffold_27055_curated Species: Arthrobacter sp. PAMC25486 (50%)	2	1417 bp	68.74	1.00	100.14
scnpilot_solids1_trim150_scaffold_27122_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1414 bp	67.54	1.00	100.14
scnpilot_solids1_trim150_scaffold_28408_curated Species: Microbacterium sp. oral taxon 186 (50%)	2	1366 bp	71.16	1.00	100.15
scnpilot_solids1_trim150_scaffold_16454_curated Species: Microbacterium azadirachtae (50%)	2	2028 bp	70.22	1.00	100.15
scnpilot_solids1_trim150_scaffold_27720_curated Genus: Arthrobacter (66.67%)	3	1324 bp	68.96	1.00	100.15
scnpilot_solids1_trim150_scaffold_11256_curated Species: Microbacterium mangrovi (100%)	2	2606 bp	71.49	1.00	100.15
scnpilot_solids1_trim150_scaffold_12047_curated Species: Arthrobacter sp. FB24 (66.67%)	3	2525 bp	66.93	1.00	100.16
scnpilot_solids1_trim150_scaffold_31743_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1261 bp	67.49	1.00	100.16
scnpilot_solids1_trim150_scaffold_12139_curated Species: Microbacterium sp. C448 (100%)	2	2513 bp	70.12	1.00	100.16
scnpilot_solids1_trim150_scaffold_18318_curated Species: Beutenbergia cavernae (100%)	2	1869 bp	70.73	1.00	100.16
scnpilot_solids1_trim150_scaffold_33827_curated Species: Actinotalea fermentans (50%)	2	1204 bp	70.02	1.00	100.17
scnpilot_solids1_trim150_scaffold_37753_curated Species: Microbacterium sp. C448 (50%)	2	1111 bp	72.10	1.00	100.18
scnpilot_solids1_trim150_scaffold_10545_curated Genus: Microbacterium (100%)	3	2776 bp	68.05	1.00	100.18
scnpilot_solids1_trim150_scaffold_10904_curated Class: Actinobacteria (66.67%)	3	2704 bp	70.19	1.00	100.18

Displaying items 901-950 of 1001 in total

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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