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scnpilot_solids2_trim150_scaffold_1066_curated_14

Organism: solids_Actinobacteria_2

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: 13647..14519

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) RepID=D5UX82_TSUPD similarity UNIREF
DB: UNIREF100
  • Identity: 68.9
  • Coverage: 286.0
  • Bit_score: 388
  • Evalue 8.20e-105
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 68.9
  • Coverage: 286.0
  • Bit_score: 388
  • Evalue 2.60e-105
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADG80101.1}; TaxID=521096 species="Bacteria; Actinobacteria; Corynebacteriales; Tsukamurellaceae; Tsukamurella.;" source="Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 /; NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.9
  • Coverage: 286.0
  • Bit_score: 388
  • Evalue 1.20e-104

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Taxonomy

Tsukamurella paurometabola → Tsukamurella → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 873
ATGGATCCACCAGCACTGTCGGCCGCGTTCGAGGAGCACCGGGCGCGGCTGCTGTCGATCGCCACCCGGGTGCTGGGATCGCGCGCCGACGCCGAAGACGCCGTGCAGGAGACGTGGATCCGGCTGGATCGGCAGGACGCGGATCGGATAGGCAATCTGGGCGGCTGGCTCACCCAGGTGATCGGTCGTATCTGCATCGACATGCTGCGTAGCCGGTCGGCACGGCCCGAATGGCCCGCCGAGCCGTGGGGAACCGATCCGGAGGTGACGGAGGATGCGGAGCTGCCCGAGGACGCGACGGTGCTGGCCGACTCCGTCAGCCTGGCGATGCTGGTGGTGCTGGAAGCGCTCCGCCCGGAGGAGCGCTTGGCGTTCGTGCTACACGACGTGTTCGCGGTGCCGTTTGCGGAGGTCGGTGCGATCGTTGGCCGGTCGAGCGATGCCGCCAAGATGCTCGCCAGCCGGGCCAGGCGCAAGGTGCAGCAGGTGCCGCGGCCAACCGGCGAGCGACGGGAGCGGCGCGCGGTGGTGGACGCCTTCCTGGCCGCAGCCCGGGACGGCGACTTCGACGCGCTGCTACGGCTTCTCGACCCGGACGTGACCTGGCACCTGCACACCAGGCGCGGTCACGTGGTGCAGATCGGTGCCGACGCGGTGCTCGCGGCGGTGCGGCGTGGCGACCCGACCCGACTGGAGGCGCGCAGGGTCAGCGTCAACGGGGAGCCCGGCATCCTGGCCTGGGGGCCAGGCGGACGGCCGTTGGCGCTCATGTCGTGCACCATCGCCAGCGGGCAGCTGGTGGACATCGTCTCGATCGTCGATCCGGCGAGGCTCAAGGGCATGGTGCTGCCCCCACGCGACCGGACGGCGTGA
PROTEIN sequence
Length: 291
MDPPALSAAFEEHRARLLSIATRVLGSRADAEDAVQETWIRLDRQDADRIGNLGGWLTQVIGRICIDMLRSRSARPEWPAEPWGTDPEVTEDAELPEDATVLADSVSLAMLVVLEALRPEERLAFVLHDVFAVPFAEVGAIVGRSSDAAKMLASRARRKVQQVPRPTGERRERRAVVDAFLAAARDGDFDALLRLLDPDVTWHLHTRRGHVVQIGADAVLAAVRRGDPTRLEARRVSVNGEPGILAWGPGGRPLALMSCTIASGQLVDIVSIVDPARLKGMVLPPRDRTA*