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scnpilot_solids2_trim150_scaffold_16_curated_18

Organism: solids_Actinobacteria_2

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: comp(21633..22157)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigL n=1 Tax=Amycolatopsis methanolica RepID=UPI000368FA59 similarity UNIREF
DB: UNIREF100
  • Identity: 60.7
  • Coverage: 163.0
  • Bit_score: 192
  • Evalue 4.00e-46
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.3
  • Coverage: 163.0
  • Bit_score: 192
  • Evalue 5.60e-46
ECF family RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 62.0
  • Coverage: 163.0
  • Bit_score: 188
  • Evalue 2.40e-45

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Taxonomy

Saccharomonospora marina → Saccharomonospora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 525
ATGATCGCCGGCCTGGCGCGACCCACCGACGCGGAACTGCTGCGCCGCCTGCACGACGAGCACGCCGCCGCGCTGTGGGGATTCGCGGTGCGGCTACTCGGCGGTGACGAGGCGGCGGCGCAGGACGTCGTGCAGGAGACCCTGCTGCGTGCCTGGCAACACCCGGCGGTGCTCGACCCGGAAACCGCTTCGATCCGAGGGTGGCTGTTCACCGTCGCGCGGCGAATCGTCATCGACCAGCGCCGGCGGGAGCACCGCCGACCCGAGGTGGTGACGGCGCGGCCGCCCGAGCCAACGGCGGCCGACCCCACGGAACCGTTGGCCGACCGGGCCGTGGTGCTGGATGCGCTGCGCACCCTGTCGGCGGAGCATCGGGCCGTGCTACTGGAGTGCTACTTCCGGGGCGCGTCGGTGGCGCAAGCCGCGGCGACGCTCGGAATCGCGGAGGGCACGGTCAAGTCGCGAACGCACTACGCGTTGCGGGCATTACGGACGGCGCTGGTGGAACAGGGAGGGTGGGCATGA
PROTEIN sequence
Length: 175
MIAGLARPTDAELLRRLHDEHAAALWGFAVRLLGGDEAAAQDVVQETLLRAWQHPAVLDPETASIRGWLFTVARRIVIDQRRREHRRPEVVTARPPEPTAADPTEPLADRAVVLDALRTLSAEHRAVLLECYFRGASVAQAAATLGIAEGTVKSRTHYALRALRTALVEQGGWA*