ggKbase home page

scnpilot_solids2_trim150_scaffold_20_curated_164

Organism: solids_Bacteroidetes_1

near complete RP 49 / 55 BSCG 46 / 51 ASCG 13 / 38 MC: 1
Location: 188446..189036

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003792273 similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 195.0
  • Bit_score: 205
  • Evalue 5.10e-50
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KEQ31626.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.5
  • Coverage: 192.0
  • Bit_score: 205
  • Evalue 5.50e-50
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 55.7
  • Coverage: 192.0
  • Bit_score: 204
  • Evalue 2.70e-50

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedobacter antarcticus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 591
ATGAAGACTCATACTTTAAGCGATCACACTTTGTTGCAGCAATTCCATGCCGGAAATGAAAAAGCCTTAGAAGCGCTTATTCATCGCTACAAAGACAAAGTTTTTACTGCCATATTCGTGATGGTTCGCGACAAATACCTTGCAGAAGATATTTTCCAAGAAGTATTCATAAAAGCGGTTAACAAATTGCGCGCAGGGAAATATAACGAAGAAGGAAAATTGGCTCCTTGGTTACTTAGAATTGCTCATAACCACTGTATTGATTATTTTAGAAAAACTAAGAATGCTCCAGGCATTACCGTAACCACCAGCACTGGTGAAGACATCTTTAAATACATTGGTGTTGATGACAAGCAAGAAAAAGATTTTCAAGAGGTTGAAAATAAAGAAAGCAAACTAAAAATGCTGATTGAACAACTGCCTGCCGACCAAAGAGAAGTGATAATACTAAGGCACTTCTACGATTTTAGTTTTAAAGAAATTGCTGCCTACACTAATGTAAGCATCAATACTTCGTTGGGCAGAATGCGCTATGCGTTAATTAACTTGCGTAGAATTATTGAAAAAGAAAAAGTGGAAGTGATGTGGTAA
PROTEIN sequence
Length: 197
MKTHTLSDHTLLQQFHAGNEKALEALIHRYKDKVFTAIFVMVRDKYLAEDIFQEVFIKAVNKLRAGKYNEEGKLAPWLLRIAHNHCIDYFRKTKNAPGITVTTSTGEDIFKYIGVDDKQEKDFQEVENKESKLKMLIEQLPADQREVIILRHFYDFSFKEIAAYTNVSINTSLGRMRYALINLRRIIEKEKVEVMW*