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scnpilot_solids2_trim150_scaffold_6366_curated_1

Organism: solids_Rhodanobacter_1

partial RP 28 / 55 MC: 3 BSCG 30 / 51 MC: 4 ASCG 8 / 38 MC: 1
Location: comp(3..533)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXS1_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 98.9
  • Coverage: 177.0
  • Bit_score: 341
  • Evalue 4.10e-91
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.9
  • Coverage: 177.0
  • Bit_score: 341
  • Evalue 5.80e-91
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 92.7
  • Coverage: 177.0
  • Bit_score: 317
  • Evalue 3.40e-84

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 531
ATGAACAGCAAAGCTCCCCATGAGCAACAGTCGGAAATCAAGGCACTCATCTCGAAGGGCCTGGAGCAGGGCTATCTGACCTACGCCGAGATCAACGATCACCTCCCCGACGACATCGTCGACCCGGAGCAGATCGAAGACATCATGGCGGTGCTCAAGGGCGTCGGCATCGAAGTCCATGACGCCGCGCCGGATACCGACACCATCTCCGACAGCGCCGCCCCCGGCGGCGGCCCGGGCGATGACGACTCCGCCGCCGAAGAGGCCGTGGCGCTGCTCTCCGCCGTGGACGCCGAAGTGGGCCGCACCACCGACCCGGTGCGCATGTACATGCGCGAGATGGGCACGGTCGAGCTGCTCACCCGCGAGGGCGAGATCGCCATCGCCAAGCGCATCGAGGAAGGCCTGGGCCAGGTGCAGACCGCACTGGCCAGTTTCCCGCTGACCATCGAGCTGCTGCTGGAGGAATACGACCAGCACCTGGACGGCAAGCGCCGCCTCAGCGAGATCCTGGCCGGCTTCCTCGACCTG
PROTEIN sequence
Length: 177
MNSKAPHEQQSEIKALISKGLEQGYLTYAEINDHLPDDIVDPEQIEDIMAVLKGVGIEVHDAAPDTDTISDSAAPGGGPGDDDSAAEEAVALLSAVDAEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQTALASFPLTIELLLEEYDQHLDGKRRLSEILAGFLDL