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gwc2_scaffold_1407_43

Organism: GWC2_OD1_49_9

near complete RP 45 / 55 MC: 3 BSCG 48 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: 41025..42332

Top 3 Functional Annotations

Value Algorithm Source
rpoD; RNA polymerase sigma-70 factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_01_48_11_curated UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 435.0
  • Bit_score: 861
  • Evalue 5.30e-247
RNA polymerase sigma factor rpoD KEGG
DB: KEGG
  • Identity: 67.4
  • Coverage: 273.0
  • Bit_score: 349
  • Evalue 1.00e-93
RNA polymerase, sigma 70 subunit, RpoD subfamily similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 338
  • Evalue 3.00e+00

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Taxonomy

R_RIF_OD1_01_48_11 → RIF-OD1-1 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 1308
ATGGGTGTGACAGCTCAAGTACTACTGCACGGAATGTTGCAGCGCATGACAGGAATATCTATGTCGGCATTCAGGGTGTTTTTTGCCGGCGATACACGACTCGCATCGTTCGTAACGAAGTATGAAGAGCGTCTCCCCACTATCCTCACTGGAATCGGGCAAGATGCATTCTGGAAGTTTTGCGCGAAGCGCGAGTGGCTTCAGGCACTGCTACCCACGAATGGTAATCAGCGAGCGACTCGATGGACGGATTTTTCTGTCCACCTGCCGAACACGTTCCGAGAAGAACTCGATGACGAAGCGTTTATTGAAGCTGTGCGGCTCTATGTGTGGCTGATGCATGCTGATGAGTTCGTCCACTTTAAGGTAACTTCTCTGATCGCAGATCGGAAATCGAAGGCGCCCCCGTCTTCCGGATCACCGAAACCCAGGTCAAGCGGATCACGATCAAGCTGGTCCAGCAAACATCGCGGAGAAGACCGATCGCTTGATATGTACCTCGAAGAGATCGGTGAAACGGCGCTTCTGACTCAGCCGCAGGAAGTTTCCCTCGCCGAACGTATTAAGCAAGGTGATCAGGATGCGCTTCAGAAACTTACGAAGGCGAACTTGCGGTTCGTCGTATCAGTTGCCAAGCAGTATCAGAACCAGGGACTTTCTCTGGGAGACCTGATCCAAGAGGGCAACATCGGCTGTATCAAAGCGGCCAAGCGGTTCGACGAAACACGCGGGTTCAAGTTCATCAGCTATGCCGTGTGGTGGATACGGCAGGCGATCCTCCAAGCACTTGCCGAGCAAAGTCGCGTCGTCCGGGTTCCTGTCAATCAGGTAGGAGTGCTCCATAAGATTGGAAAGGTAGCCTCATGGCTGGAACAGGATCTCGGGAGAAAACCAACAGACGATGAGATAGCTGCCTTTATGGCCGATACGACAGTTGGCGAAGTCGAATTCGTCAAGAGGATTGGCGGTACTCATCTGTCACTCGACGCTCCATTCTCGACAGCGGAGGATAGTACTCTTCTCGATGTTCTCGAGGACGAGCTAGCGCCGCCTCCCGACAGCTCGCTTTTCAAAGATGAGCTCCGGCTCCTGGTAGAAAGAGCTATCGAGACGCTCACGCCCCGTGAAGCTGAAGTGATCGATCTCTACTTCGGTCTTTCTACAAGGAAGGGGATCCCGCTCGAGGAGATCGGAACTTGTTTTAATCTCACCCGTGAAAGGGTGAGACAGATCAAGGAAAAAGCAATCAGACGTCTCCGTCATGTAAGTCGCTCCAAAAGTCTGGTTCCGTACAAAGACGAAGATTAA
PROTEIN sequence
Length: 436
MGVTAQVLLHGMLQRMTGISMSAFRVFFAGDTRLASFVTKYEERLPTILTGIGQDAFWKFCAKREWLQALLPTNGNQRATRWTDFSVHLPNTFREELDDEAFIEAVRLYVWLMHADEFVHFKVTSLIADRKSKAPPSSGSPKPRSSGSRSSWSSKHRGEDRSLDMYLEEIGETALLTQPQEVSLAERIKQGDQDALQKLTKANLRFVVSVAKQYQNQGLSLGDLIQEGNIGCIKAAKRFDETRGFKFISYAVWWIRQAILQALAEQSRVVRVPVNQVGVLHKIGKVASWLEQDLGRKPTDDEIAAFMADTTVGEVEFVKRIGGTHLSLDAPFSTAEDSTLLDVLEDELAPPPDSSLFKDELRLLVERAIETLTPREAEVIDLYFGLSTRKGIPLEEIGTCFNLTRERVRQIKEKAIRRLRHVSRSKSLVPYKDED*