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sw_7_scaffold_7406_4

Organism: SW_7_Actinobacteria_72_16

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: comp(2832..3359)

Top 3 Functional Annotations

Value Algorithm Source
16S rRNA-processing protein RimM n=1 Tax=Nocardiopsis alkaliphila RepID=UPI00034B53CF similarity UNIREF
DB: UNIREF100
  • Identity: 44.7
  • Coverage: 170.0
  • Bit_score: 108
  • Evalue 5.80e-21
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia s similarity UNIPROT
DB: UniProtKB
  • Identity: 42.9
  • Coverage: 177.0
  • Bit_score: 107
  • Evalue 1.80e-20
rimM; 16S rRNA-processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 42.9
  • Coverage: 177.0
  • Bit_score: 106
  • Evalue 6.20e-21

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Taxonomy

Frankia sp. CpI1-S → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 528
GTGGCCCACGAAGGGGCGCCCGTCGGGGGGACGCCCGTGCGGCTGGGGGTCGTCGGTCCCGCCCACGGGATTCGCGGTGACGTCGTGGTCCACCCCGATGCCGACTTGGTCGACCTCGTTGAGCCCGGGCGGGTGTGCTGGCGCGCCCACGGCGAGGCGCTGGAGATCGCCGAGGTGCGCCAGCACAAGCAGCGCACCCTGGTGCGCTTTGTCGGCATCGAGGACCGCACGGCGGCCGAGGCGCTGCGCGGCACCGTGCTGGAGCTCGATCCGGCCGAGGTCGAGCCCGACGAGGACACGCTGTGGGTCGAGGGGCTGGTGGGCGCGGCGGTCGTCGACGACGCCGGGACGGCGGTCGGCGCCGTGCAGCGAGTCGACGACGGGCCGGGCCATGACTGGTTGGTCGTGGCCGCCGATGATCGCGAGGCGATGGTGCCGCTGGTCGACGAGCTCGTCGACGTCGACATGGAGGCCGGGCGGATCACGGTCCATGCGCTGCCGGGGTTGCTCGACGACGACTGGATGTGA
PROTEIN sequence
Length: 176
VAHEGAPVGGTPVRLGVVGPAHGIRGDVVVHPDADLVDLVEPGRVCWRAHGEALEIAEVRQHKQRTLVRFVGIEDRTAAEALRGTVLELDPAEVEPDEDTLWVEGLVGAAVVDDAGTAVGAVQRVDDGPGHDWLVVAADDREAMVPLVDELVDVDMEAGRITVHALPGLLDDDWM*