Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
sigma-70 family RNA polymerase sigma factor | similarity |
KEGG
DB: KEGG |
56.8 | 391.0 | 427 | 3.60e-117 | ddl:Desdi_2932 |
sigma-70 family RNA polymerase sigma factor | rbh |
KEGG
DB: KEGG |
56.8 | 391.0 | 427 | 3.60e-117 | ddl:Desdi_2932 |
RNA polymerase sigma factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3K2_DESAS (db=UNIREF evalue=1.0e-116 bit_score=423.0 identity=60.28 coverage=90.7928388746803) | similarity |
UNIREF
DB: UNIREF |
60.28 | 90.79 | 423 | 1.00e-116 | ddl:Desdi_2932 |
seg (db=Seg db_id=seg from=85 to=95) | iprscan |
interpro
DB: Seg |
null | null | null | null | ddl:Desdi_2932 |
SIGMA70_2 (db=PatternScan db_id=PS00716 from=350 to=376 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | ddl:Desdi_2932 |
RpoD_Cterm: RNA polymerase sigma factor R (db=HMMTigr db_id=TIGR02393 from=153 to=390 evalue=2.1e-170 interpro_id=IPR012760 interpro_description=RNA polymerase sigma factor RpoD, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 2.10e-170 | ddl:Desdi_2932 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=118 to=227 evalue=8.1e-53 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 8.10e-53 | ddl:Desdi_2932 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=121 to=226 evalue=9.6e-51) | iprscan |
interpro
DB: Gene3D |
null | null | null | 9.60e-51 | ddl:Desdi_2932 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=329 to=341 evalue=7.1e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 7.10e-31 | ddl:Desdi_2932 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=205 to=213 evalue=7.1e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 7.10e-31 | ddl:Desdi_2932 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=181 to=194 evalue=7.1e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 7.10e-31 | ddl:Desdi_2932 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=365 to=376 evalue=7.1e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 7.10e-31 | ddl:Desdi_2932 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=350 to=365 evalue=7.1e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 7.10e-31 | ddl:Desdi_2932 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=287 to=390 evalue=1.0e-28 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.00e-28 | ddl:Desdi_2932 |
Sigma70_r3 (db=HMMPfam db_id=PF04539 from=236 to=311 evalue=2.4e-28 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.40e-28 | ddl:Desdi_2932 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=152 to=380 evalue=8.4e-28 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 8.40e-28 | ddl:Desdi_2932 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=311 to=389 evalue=8.4e-25 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 8.40e-25 | ddl:Desdi_2932 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=230 to=304 evalue=2.1e-24 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.10e-24 | ddl:Desdi_2932 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=159 to=227 evalue=6.1e-21 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.10e-21 | ddl:Desdi_2932 |
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=325 to=378 evalue=9.2e-20 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 9.20e-20 | ddl:Desdi_2932 |
Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=118 to=154 evalue=1.6e-17 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.60e-17 | ddl:Desdi_2932 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=230 to=281 evalue=1.7e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 1.70e-17 | ddl:Desdi_2932 |
Sigma70_r1_1 (db=HMMPfam db_id=PF03979 from=33 to=105 evalue=6.2e-07 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription regulator activity (GO:0030528), Biological Process: regulation of transcription (GO:0045449)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.20e-07 | ddl:Desdi_2932 |
dae:Dtox_3036 RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor alias=ACD40_C00014G00005,ACD40_23451.9243.14G0005,ACD40_23451.9243.14_5 id=51429 tax=ACD40 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OP11 organism_desc=OP11 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 754 | 1.80e-215 | ddl:Desdi_2932 |
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" |
UNIPROT
DB: UniProtKB |
100.0 | 390.0 | 754 | 6.30e-215 | K2C3E3_9BACT |