ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_35202_3

Organism: PLM4_65_b1_sep16_Deltaproteobacteria_57_7

near complete RP 48 / 55 MC: 2 BSCG 47 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: comp(2600..3376)

Top 3 Functional Annotations

Value Algorithm Source
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARS3_PELPD bin=16ft_combo_ws3_JS1 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade similarity UNIREF
DB: UNIREF100
  • Identity: 38.9
  • Coverage: 180.0
  • Bit_score: 123
  • Evalue 2.00e-25
sigma-54-dependent transcriptional response regulator similarity KEGG
DB: KEGG
  • Identity: 34.5
  • Coverage: 194.0
  • Bit_score: 120
  • Evalue 4.70e-25
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 38.9
  • Coverage: 180.0
  • Bit_score: 123
  • Evalue 2.80e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 777
GTGAAGTCAAAAATTTTGCTGGTAGATGACGAAGAGAATGTCTTGACGCAAATGCGTTTGGTATTCGAGCCGGATTATGAAGCATTAACAAGTAGCAATGAAGAAGAAGCAATTCAGGTATTTAGAGATAATAAGCCAGCGGTCGTGATATCAGACCTGTCCCTAAAACCCCATGACCCATCGGATCTGGGCGGTATGCGATTACTTGAACGGATCCTGTCGGAAGAGCCTGCCACACGGGTTATCATAGTCACGGGAAATAACCAACAAACGAACGCGTTAAGAGCCATACAACTTGGCGCATCTGACTACTATTCCAAACCGATTCGAGTCGAAGAGCTAAAGGTAATGGTCCAACGAGCACTACATCTCCATGTTCTGCAACAAATGTTATACCATACTTACTCGCGATCCGGTGAAAGGGTTACGGATACGATTGGAAAAGCCAAACGTATGGGGGACATTCCACTCGTCAGCAGATCGGTAGTGCTTAGTCCTCACGCAGTTCTCAAGCCAAGCGACTTAGGACTTGCTTTGGACCCAGTTCCGACTGACGTCAACCTAAAACTAGCCAAAAAGGCCATCGAAATTGATTTCGTTAAGAAAGCGCTTTCTCGTAATAAAGGTATTGTGAGTCGCGCGGCCCGTGAGCTAGGCATAAGCCGCGTCAACCTTTATGATCTAATCCAAAAGTACAGTATCCGCATTCAAGAATTCAAACTGCAGCGATCCAAGCCACCAATCGCAATTGAACCGACGGGAGGTAGTCTAACTTGA
PROTEIN sequence
Length: 259
VKSKILLVDDEENVLTQMRLVFEPDYEALTSSNEEEAIQVFRDNKPAVVISDLSLKPHDPSDLGGMRLLERILSEEPATRVIIVTGNNQQTNALRAIQLGASDYYSKPIRVEELKVMVQRALHLHVLQQMLYHTYSRSGERVTDTIGKAKRMGDIPLVSRSVVLSPHAVLKPSDLGLALDPVPTDVNLKLAKKAIEIDFVKKALSRNKGIVSRAARELGISRVNLYDLIQKYSIRIQEFKLQRSKPPIAIEPTGGSLT*