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PLM4_65_b1_redo_sep16_scaffold_55014_2

Organism: PLM4_65_b1_sep16_Deltaproteobacteria_57_7

near complete RP 48 / 55 MC: 2 BSCG 47 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: comp(513..1850)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XQD3_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 66.4
  • Coverage: 429.0
  • Bit_score: 587
  • Evalue 1.10e-164
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF57957.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.4
  • Coverage: 429.0
  • Bit_score: 587
  • Evalue 1.50e-164
RNA polymerase ECF-subfamily sigma factor similarity KEGG
DB: KEGG
  • Identity: 55.6
  • Coverage: 428.0
  • Bit_score: 463
  • Evalue 5.10e-128

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1338
ATGGCAGGTTCGAATCTCACCAGCCCAATACCACCGCCTGGGGAAGTGACCCAGGTGGTGGAGCATTTTTTCCGCCACGAGGCGGGAAAGATGATCTCGACCTTGACGAGGATCTTCGGCATCGAACACCTTAACCGGGCCGAAGACGTGGTGCAGGAAACTTTAGCGAGGGCATTGCAGACCTGGCCCTATTACGGCATCCCGAAAAATCCTGCCGCCTGGATCACCCAGGTGGCAAAAAATCTCGCCCTCGACCTCATCCGCCGCGATAAAGTCTTCCGCAACAAGGAAAATGAGATCGTCCATTTGATGGAGCAGGTCTCCACAGATTACGGTGCGGCGGCTTCCGATCCCGTGGAGGATGGCATCACGGATGACCGTTTGCGGATGATGTTCACCTGTTGTCATCCTCTCATTCCGCAGGAGATGCAGGTTGCGCTCGCGCTCAAGACACTTTGCGGATTCAGTCCCGCGGAAATCGCCCGAGCATTTCTTACCTCGGAAGCAGCGATCGCCAAGCGGTTGACGCGGGCCAAACAAAGAATCCGCGACGCCCGCATCGCGTTCGAAATCCCCGTCGGGGAAGAATTGATCCTACGCTTGGACGGCGTGCTCCAGACGCTCTACCTGCTTTTTAACGAAGGCTACAAAGCTTCGGGCGGCGAGCATCTGATCCGGGCGGAACTTTGCCATGAAGCGATCCGCCTGACAGCGTTGTTGGCCGAACACTCCGCCGGCAATCAACCGCGCTCGTACGCCCTGCTGGCGCTGATGTTGCTAAACGGCGCGCGCCTGCCCGCTCGATTGGATGCCGAGGGAAATATCCTTCGCCTCGAGGAGCAGAACCGCTCACAGTGGGACCAGGCGATGATCGCTCGCGGCTTGTATCACCTCATGCAATCCACCGCCGGCGACGAAGCCAGCGAATATCATCTTCAAGCCGCCATCGCGGCCTGCCACTGCGCCGCACAGGATTACGAATCCACGGACTGGCCGCGCATCTTGTCGCTCTACGACCGCTTGATCGAGTTGGACGACTCCCCCGTCGTAGCCCTGAATCGAGCCGTCGCCGTCGCCAACGTTCACGGTCCGAGACCGGGCATCGAAGCGGTAGAAGCCATTCACGACCGCCAGCAGTTGGATTGTTATTACCTGCTCTACGCGGTGTTGGGCGAGTTCGAGGCGGATTTAGACCATCGCCAGGCCGCGATGAAACATTTTCGCAAAGCGCTTGAATTGGCCACGATGAAGTCGGAACAGATTTTCCTGACAAAAAAAATTCAGGAGCTCGACGACATCGACACCAAGGAAGGCCGCCGAGGCAGCGCGTCGCGCTAG
PROTEIN sequence
Length: 446
MAGSNLTSPIPPPGEVTQVVEHFFRHEAGKMISTLTRIFGIEHLNRAEDVVQETLARALQTWPYYGIPKNPAAWITQVAKNLALDLIRRDKVFRNKENEIVHLMEQVSTDYGAAASDPVEDGITDDRLRMMFTCCHPLIPQEMQVALALKTLCGFSPAEIARAFLTSEAAIAKRLTRAKQRIRDARIAFEIPVGEELILRLDGVLQTLYLLFNEGYKASGGEHLIRAELCHEAIRLTALLAEHSAGNQPRSYALLALMLLNGARLPARLDAEGNILRLEEQNRSQWDQAMIARGLYHLMQSTAGDEASEYHLQAAIAACHCAAQDYESTDWPRILSLYDRLIELDDSPVVALNRAVAVANVHGPRPGIEAVEAIHDRQQLDCYYLLYAVLGEFEADLDHRQAAMKHFRKALELATMKSEQIFLTKKIQELDDIDTKEGRRGSASR*