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PLM4_65_b1_redo_sep16_scaffold_18315_3

Organism: PLM4_65_b1_sep16_Gemmatimonadetes_71_15

near complete RP 45 / 55 MC: 1 BSCG 42 / 51 ASCG 12 / 38
Location: 1002..1553

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor Tax=Fulvivirga imtechensis AK7 RepID=L8JPU4_9BACT bin=16ft_combo_ws3_JS1 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade similarity UNIREF
DB: UNIREF100
  • Identity: 53.5
  • Coverage: 172.0
  • Bit_score: 172
  • Evalue 3.40e-40
rpoE5; RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 46.0
  • Coverage: 161.0
  • Bit_score: 127
  • Evalue 2.70e-27
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 53.5
  • Coverage: 172.0
  • Bit_score: 172
  • Evalue 4.80e-40

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Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 552
GTGAACGACGATCGCCCGCTGGTACACGACTACCTGCGGACGCGGAGCGACCTCGCGTTCCGGGCACTGTACCGGCGCCACGCGCCCGCGCTGCACGCGCTCGCGCTCCGACTGGTCGGCGGGTCGGCGGCGGATGCCGAGGACGCACTCCAGGAGACGTGGCTCCGGGCGGCGGCCGGCCTCACCCAGTTCCGCTGGGAGTCGAGCCTCCGCACCTGGCTGTGCGGGATCGCGGTGAACTGCGCCCGCGAGGTGCGGCGGCGCCGGGGTGACAGCGCGCCACCCGGGGTGGTGGCCCTGCGCCCGGCCCGGGCCGACGCGGTGGCCGAGCGGATGGACCTCGAGCGGGCCATCGCCGGGCTGGCGGAAGGCTACCGGGAAATCTTGCTGCTGCACGACGTGCACGGCTATGCCCACCGGGAGATCGCCCAGTTGCTTCAGATCACCGAGATGACCTCGCGCAGCCAGCTGACGCGGGCGCGCCGGGCCGTGCGCCTGGCCCTCGGCCCGCGGGCCGGGAGCGACTCCGAGGAGGACCGAGCCCATGCCTGA
PROTEIN sequence
Length: 184
VNDDRPLVHDYLRTRSDLAFRALYRRHAPALHALALRLVGGSAADAEDALQETWLRAAAGLTQFRWESSLRTWLCGIAVNCAREVRRRRGDSAPPGVVALRPARADAVAERMDLERAIAGLAEGYREILLLHDVHGYAHREIAQLLQITEMTSRSQLTRARRAVRLALGPRAGSDSEEDRAHA*