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PLM3-1_170_b1_sep16_scaffold_15920_1

Organism: PLM6_170_b1_sep16_Actinobacteria_69_15

near complete RP 41 / 55 MC: 2 BSCG 44 / 51 MC: 3 ASCG 7 / 38
Location: 2..901

Top 3 Functional Annotations

Value Algorithm Source
Lipopolysaccharide biosynthesis protein, putative TDP-4-oxo-6-deoxy-D-glucose transaminase {ECO:0000313|EMBL:CCE24411.1}; EC=2.6.1.- {ECO:0000313|EMBL:CCE24411.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.1
  • Coverage: 269.0
  • Bit_score: 357
  • Evalue 1.70e-95
TDP-4-oxo-6-deoxy-D-glucose aminotransferase Tax=Methylomicrobium buryatense RepID=UPI0003449AE4 similarity UNIREF
DB: UNIREF100
  • Identity: 64.8
  • Coverage: 270.0
  • Bit_score: 358
  • Evalue 5.50e-96
rffA; lipopolysaccharide biosynthesis protein, TDP-4-oxo-6-deoxy-D-glucose transaminase similarity KEGG
DB: KEGG
  • Identity: 65.1
  • Coverage: 269.0
  • Bit_score: 357
  • Evalue 3.50e-96

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Taxonomy

Methylomicrobium alcaliphilum → Methylomicrobium → Methylococcales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
GACACGCTCTGTATCGATGAGCGCCAGATCGAGTCGGCGATCGGGCCGCGCACGAAGGCGATCGTCCCGGTTCACTATGCGGGCGTCGGCTGCGAGATGGGTGCCATCAGCGAGCTTGCCGCGGCGCACGACCTCCTGGTCATCGAGGACGCGGCCCACGGTATCGGCGCGACGGTCGGCGGCAGACCGCTCGGTGCGATCGGCCACCTTGGGACCTATAGCTTCCACGAGACGAAGAACGTCAGCTGCGGAGAGGGTGGTGCCCTTCTCGTCAACGACGAGCGCTTCCTCGAGCGGGCGGAGATCGTGCATGAGAAGGGCACCAACCGGACCCGCTTCCTGCGTGGTCAAGTAGACAAGTACACGTGGGTGGACGTTGGCTCGTCCTACGCGCTCAGCGAGCTCGCGGCGGCATACCTCTGGGCGCAACTCGAGCACGAGCGGGAAATCACCGCCAGACGCCTGGGCATCTGGAACCGCTACCACTCCGCCTTTGCCGAGCTCGAGGCAGACGGGCTGCTCCGGCGCCCTGTGGTCCCGAGCGACCGTCGGCACAACGCACACATGTATTACCTGCTTCTCGACGACCTGTCGACCCGTACGGCCTTCATCGAATGGCTAGGGTCGCGCGGCGTGCACGCCGTCTTCCACTACGTACCGCTGCACACGTCGAGCGCGGGCCAGCGGTATGCACTCGCCCATGGCGACCTCCCCGTGACGACCGACGTGAGCGAGCGACTCGTGCGGCTGCCACTCTGGGCGGACATGACCGACAGCCAGATCGATCGCGTCATCGAAGCCGTTTCGAGCTTCCCTCGCGCGCTGAGAAGTCCAAAGACCCCGAAGCCGATCGACGGTCGACGACCGTCGACACCCCGGACCCGTCCGGCAACCCTCTGA
PROTEIN sequence
Length: 300
DTLCIDERQIESAIGPRTKAIVPVHYAGVGCEMGAISELAAAHDLLVIEDAAHGIGATVGGRPLGAIGHLGTYSFHETKNVSCGEGGALLVNDERFLERAEIVHEKGTNRTRFLRGQVDKYTWVDVGSSYALSELAAAYLWAQLEHEREITARRLGIWNRYHSAFAELEADGLLRRPVVPSDRRHNAHMYYLLLDDLSTRTAFIEWLGSRGVHAVFHYVPLHTSSAGQRYALAHGDLPVTTDVSERLVRLPLWADMTDSQIDRVIEAVSSFPRALRSPKTPKPIDGRRPSTPRTRPATL*