ggKbase home page

PLM4_5_b1_sep16_scaffold_12502_5

Organism: PLM4_5_b1_sep16_Eisenbacteria_68_23

near complete RP 48 / 55 MC: 2 BSCG 48 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: comp(3365..3646)

Top 3 Functional Annotations

Value Algorithm Source
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin similarity UNIREF
DB: UNIREF100
  • Identity: 95.7
  • Coverage: 93.0
  • Bit_score: 171
  • Evalue 3.90e-40
hupB; transcriptional dual regulator HU-beta similarity KEGG
DB: KEGG
  • Identity: 63.0
  • Coverage: 92.0
  • Bit_score: 116
  • Evalue 3.20e-24
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 95.7
  • Coverage: 93.0
  • Bit_score: 171
  • Evalue 5.40e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 282
ATGGCCAAGATGATGACCAAGTCGCAGATCGCGGGTCACCTCGCGAACAAGTTTGAGCTCACCAAGAAGCAGAGCACCCTGATTCTCGAAGAGCTCGCGACCCTGGCCGCCAAGCAGGCGCGCAATGGTTTCGTGTTCCCGGGCGTCGGCAAGCTCGTCGTGGTGAAGCGCAAGGCGCGCATGGGCCGCAACCCGCAGACCGGCGAGGCGATCAAGATTCCGGCCAAGACCGTTCTGAAGTTCCGCATCGCGAAGGCGATGAAGGAGCTGGCGCTCAAGTAG
PROTEIN sequence
Length: 94
MAKMMTKSQIAGHLANKFELTKKQSTLILEELATLAAKQARNGFVFPGVGKLVVVKRKARMGRNPQTGEAIKIPAKTVLKFRIAKAMKELALK*