ggKbase home page

PLM4_65_coex_sep16_scaffold_21067_1

Organism: PLM4_65_coex_sep16_Deltaproteobacteria_Geobacteraceae_55_13

near complete RP 48 / 55 MC: 5 BSCG 47 / 51 MC: 5 ASCG 13 / 38 MC: 5
Location: comp(87..1019)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01080}; Short=Psi55 synthase {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridylate synthase {ECO:0000255|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000255|HAMAP-Rule:MF_01080}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.4
  • Coverage: 310.0
  • Bit_score: 418
  • Evalue 6.50e-114
tRNA pseudouridine synthase B Tax=Geobacter uraniireducens (strain Rf4) RepID=TRUB_GEOUR similarity UNIREF
DB: UNIREF100
  • Identity: 68.4
  • Coverage: 310.0
  • Bit_score: 418
  • Evalue 4.60e-114
tRNA pseudouridine synthase B similarity KEGG
DB: KEGG
  • Identity: 68.4
  • Coverage: 310.0
  • Bit_score: 418
  • Evalue 1.30e-114

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Geobacter uraniireducens → Geobacter → Desulfuromonadales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 933
ATGGACGGTTTTATCGTTATTGACAAGCCGGTCGGGATGACCTCTCATGATGTGGTAAGCGCTGTTCGCAGGATTACCGGTCAGAAAAAGGTCGGCCATACAGGTACACTTGACCCCTTTGCAACCGGTGTATTGCCGGTCGCCCTCGGAGAGGGGACCAAGGCCATACCTTTCCTCGATGAATCGATCAAGGAATACCGGGCGGTGATGGTGCTCGGAGTTGCCACGGATACCCAGGACTGCACTGGATCGGTTGTCCACGAAGGCGACTGGAGTCATGTGACACCCGGTGACCTTGAGGATCTCTGTCGTTCATTTACCGGCGGTTCGACTCAGATTCCACCCATGTTCTCTGCCTTGAAACGAAACGGCGTGCCGCTCTACAAACTGGCCCGCCAGGGCATCGAAGTGTTGCGCGAACCAAGGGCGATCGAGATATTTTCCCTGGTTTTAGATGACGTCAAACTTCCTCAAGTCGCTTTTACCGTCAGCTGTTCCCGCGGCAGTTATATCAGGACACTGGCAAACGATATGGGAGAAAGGCTCGGCTCCGGTGCACATCTATTGCAACTGCGCAGAACCAGGAGTGGCCCTTTTTGCATCGGTAACGCAATTACCCTGGAGAGGTGGGCCCAATGTGTTGAGGAACGCCGGACAGAGGACGTCCTCATTTCGCCTTATGGAGCGCTCGCTCAGCTGAAGGATTTTCCCCTGACGGCTAAAGGTGCTGCAATGGTGGCACATGGGATTTTCCCGGTCCAGGATGTTTTCCAGGAGACTTCAGGCTGCGTGCATCAGTCGGGCGAGCTGGCAAGGCTCTCCATCGGCGGAACCCTTCTCGGCGTTGCAGAAATCTGCACTCCCCGTGATGGCGGAAGATCAAAAAACTCCAGGCTTTTAAGGGTGTTCAACCAGCATAATTCCTTTACATAG
PROTEIN sequence
Length: 311
MDGFIVIDKPVGMTSHDVVSAVRRITGQKKVGHTGTLDPFATGVLPVALGEGTKAIPFLDESIKEYRAVMVLGVATDTQDCTGSVVHEGDWSHVTPGDLEDLCRSFTGGSTQIPPMFSALKRNGVPLYKLARQGIEVLREPRAIEIFSLVLDDVKLPQVAFTVSCSRGSYIRTLANDMGERLGSGAHLLQLRRTRSGPFCIGNAITLERWAQCVEERRTEDVLISPYGALAQLKDFPLTAKGAAMVAHGIFPVQDVFQETSGCVHQSGELARLSIGGTLLGVAEICTPRDGGRSKNSRLLRVFNQHNSFT*