ggKbase home page

PLM3-1_200_b1_sep16_scaffold_1865_6

Organism: PLM6_200_b1_sep16_Dadabacteria_40_8

near complete RP 41 / 55 MC: 2 BSCG 41 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: 4751..6241

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor bin=bin1_lowGC species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP similarity UNIREF
DB: UNIREF100
  • Identity: 59.4
  • Coverage: 507.0
  • Bit_score: 594
  • Evalue 5.80e-167
sigma-54 factor RpoN similarity KEGG
DB: KEGG
  • Identity: 36.5
  • Coverage: 521.0
  • Bit_score: 322
  • Evalue 2.00e-85
Tax=CSP1_2_Dadabacteria similarity UNIPROT
DB: UniProtKB
  • Identity: 59.4
  • Coverage: 507.0
  • Bit_score: 594
  • Evalue 8.10e-167

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CSP1_2_Dadabacteria → Dadabacteria → Bacteria

Sequences

DNA sequence
Length: 1491
ATGAATTCGATTGATTTAAAAATAACTCCTAGGCTCCTTCAGCAACAACGCCTAATTCTAACCCAAGATTTGCAGCTTTTTCTAAAGCTTATCCAAATGACAACTATTGAACTATCTCAATATTTAGAGGAGCAACTCCTTGAAAATCCTGCATTGGAAGACACTAAAGAAACAGCTGATGTAGCTGAAGAAACTTCAGAGAAAGAATTTGATTTCAAATCGATAGACGCGAAAATATTTAAGGGAGATGACCAAGGTCTTCCATCATCAAGAGACCTTAATGGTGAAAGCGATGATGATTTTTCATGGGAAAACAGTGTTTCTCCTCCTGATTCTTTGTTAGACCATCTTAAGTGGCAACTTAATCTGTCGGATCTCTCACCTGAAGAAAGAGAAATCGCATCGGTTATAATCGGAAACATCAATGAGGACGGATATCTCGAAGCAGATTTAGAAGAGATAGCATCAACCTTGACCAGTTCAAAGATTGCCGAAAGTTCCCCTTCAGATGATTCACTTCCTTCAAATGAGAATATGATTTCAAAGCCGGATGCAAGTTTTATTAAGTCCGTTGAAGAGATTTTAAGGAGAATTCAGTTGAGTTTCGATCCCCCTGGTGTCTGTGCTAGAGATTTGAAGGAGAGCCTAAGAATTCAGCTCGAAGATCTGGGTTATAAAAATAACTGTTTGGAAATGATTATCGTGGACAATTACTTAGAAAGCGTAAGTCAAAAGAACTATAAAGAGATTGCAAATGATCAAGGTGTCCCTATTAAAGATGTAGAAAAGGCAGTTTCCGCCATTTCATCACTGGAACCAAAGCCGGGAAGGCCTTTTTATTCTAAGGATTCTGAGAAACATATTGTCCCAGATTTTTTTGTACACAAATTAGGAAATGAGCTTCAGATTCAATTAAATCGTGAATTTCCAAAGGTCAGAGTGAGCCAATACTATAAAAACCTGATTAATAAGGGAATGCTTTCCTCGGAAACTAAGAAATACATAAAAGAAAAGATTGAATCAGCACAGAGAATCGTCAAATGTCTTGCAGAGAGAGAAGCAACAGTAAAGAAGGTAATAAGAAAGATAGTGGAGCATCAAAAGGACTTTTTTGAATATGGAAGGGACTATATTAAGCCGTTGAGATTAAAAGACGTTGCTCAGGATAAGGACGTGTCTGTGCATGAATCGACTGTGAGTAGAATAACAAGCAGGAGATATATTCATACACCACAGGGTATAATAGAACTCAAAACTCTTTTCTCAAGAAAGGTCGAAACATCACGAGGTTCGGACATATCATTTGAACGCGTCAAATTCATGCTAAAAGAGATTATAGCAAACGAGCAACCCGATAGTCCTTATTCCGACGAAGACATTGCCAAGATATTAGAGCGTAAATACATCAAGGTCGCAAGAAGGACTATTTCTAAATATAGAAAAATCCTAAATATACCACCTTCTTCAGAAAGAGTCGTTTATAAGGGGTAA
PROTEIN sequence
Length: 497
MNSIDLKITPRLLQQQRLILTQDLQLFLKLIQMTTIELSQYLEEQLLENPALEDTKETADVAEETSEKEFDFKSIDAKIFKGDDQGLPSSRDLNGESDDDFSWENSVSPPDSLLDHLKWQLNLSDLSPEEREIASVIIGNINEDGYLEADLEEIASTLTSSKIAESSPSDDSLPSNENMISKPDASFIKSVEEILRRIQLSFDPPGVCARDLKESLRIQLEDLGYKNNCLEMIIVDNYLESVSQKNYKEIANDQGVPIKDVEKAVSAISSLEPKPGRPFYSKDSEKHIVPDFFVHKLGNELQIQLNREFPKVRVSQYYKNLINKGMLSSETKKYIKEKIESAQRIVKCLAEREATVKKVIRKIVEHQKDFFEYGRDYIKPLRLKDVAQDKDVSVHESTVSRITSRRYIHTPQGIIELKTLFSRKVETSRGSDISFERVKFMLKEIIANEQPDSPYSDEDIAKILERKYIKVARRTISKYRKILNIPPSSERVVYKG*