ggKbase home page

PLM3_127_b2_sep16_scaffold_178_52

Organism: PLM3_127_b2_sep16_Betaproteobacteria_Methylophilales_62_20

near complete RP 52 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 2
Location: comp(50674..52578)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD Tax=Nitrosospira sp. APG3 RepID=M5DVC8_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 79.9
  • Coverage: 638.0
  • Bit_score: 982
  • Evalue 1.60e-283
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 79.0
  • Coverage: 632.0
  • Bit_score: 971
  • Evalue 8.20e-281
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 82.0
  • Coverage: 635.0
  • Bit_score: 1002
  • Evalue 1.60e-289

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Betaproteobacteria_64_14 → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1905
ATGGCAAGAGAAAGACGCAAAGAGCAGATCAAGGAGCAGGCGCAGGCTCAGCAGCCCATCGATGCTGAAGCCAGGCGCATGCGCCTGAAAAACCTGATCGTGCTCGGCAAGGAACGCGGCTATCTCACTTACGCGGAGATCAACGACCATCTCCCGGACGACATGCTGGATGCCGAACAGATCGAAAACATCATCAGCATGATCAACGACATGGGCATCCAGGTCTACGACGAGGCGCCGGATGCCGAAACCCTGCTGTTGAACGAGGCCACGCCGGCCGTGGTTCCCGATGAAGACGTCGTCGAGGAGGCGGAGCAGGCACTTTCAACCGTCGATTCCGAATTCGGGCGCACCACCGATCCGGTGCGCATGTACATGCGCGAGATGGGTTCGGTCGAACTGCTGACGCGCGAGGGCGAAATCGAGATCGCCAAGCGCATCGAGGACGGCCTGAAGCACATGATCCAGGCCATTTCGGCCTGCCCGACCACGATTGCCGAAATCCTCAACCTGGCCGACAAGATCGATCGCGAGGAAATGCGCATCGACGAAGTGGTGGACGGCCTGATCGACCCGAACGCGCCCGCGGAGGCGCTGGCCGAGGACGTTACCGACGAGCAACTGGAAGAGGATCTCGAGGCCGAAACCGAAGACGACGAAGACGGCGCCGCGGTGCAGAACGCCAGCATGCTCAAGCTCAAGGCCGATGCCGGCCAACGCTTCGCCAAGATCCACGTGCTCTACAACAAGATGATGAAGGCGCTGGCGAAGAATGGCTCGCGCAGCCGCCCATATCTGAAGACGCAGGAGGAGATCTCCGCCGAGCTCATGCTGATCCGCTTTTCCGCGAAGCAGGTCGAGGCCTTGTGCGATGGCCTGCGCAGGCTGGTGGATGAAGTGCGCTCTTACGAGCGCTCGATCATGGAGCTGTGCGTGGAGAAGTCCGGCATGCCGCGCTCCTATTTCATCAAAACTTTTCCCGGCAACGAGGAGGATCTCAACTGGGTCGGCCGCGAAGTGACCGGGCGCAAGCCTTACAGCGAGGTGCTGGCCCGTTTTGCGCCGGCGATCCTGGAACAGCAACAGGCGCTGATCGATCTGCAAAAGCGCGTCGGCATCCCGGTCAAGGACCTGAAGGAAATCAACCGGCAGATGTCCACCGGCGAGGCCAAGGCGCGCCGCGCCAAGCGCGAGATGACCGAGGCCAACCTGCGCCTGGTGATTTCGATCGCCAAGAAGTACACCAATCGCGGACTGCAGTTCCTCGACCTGATTCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAATACCGCCGCGGCTACAAGTTCTCGACTTATGCGACCTGGTGGATCCGCCAGGCGATCACGCGCTCGATCGCGGACCAGGCGCGCACCATCCGCATTCCGGTGCACATGATCGAAACCATCAACAAGATGAACCGCATTTCGCGCCAGATCCTGCAGGAAACCGGACAGGAACCGGATCCGGCTACGCTGGCGGTGAAGATGGAAATGCCCGAGGAAAAGATCCGCAAGATCCTCAAGATCTCGAAAGAACCAATCTCGATGGAAACCCCGATCGGCGACGACGATGATTCGCACTTGGGCGATTTCATCGAAGACCAGGCCACCATGGCGCCCTCGGACGCGGCGGTCTACACCAGCCTGCGCGATGCCACCAAGGAAGTGCTGGACACGCTCACCCCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGAACACCGACCACACGCTCGAGGAAGTCGGCAAGCAGTTCGACGTCACCCGCGAGCGCATCCGCCAGATCGAAGCCAAGGCGCTGCGCAAGCTGCGCCATCCGTCGCGCTCCGAGCGGCTGCGCAGCTTCCTGGACAATACCTGA
PROTEIN sequence
Length: 635
MARERRKEQIKEQAQAQQPIDAEARRMRLKNLIVLGKERGYLTYAEINDHLPDDMLDAEQIENIISMINDMGIQVYDEAPDAETLLLNEATPAVVPDEDVVEEAEQALSTVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMIQAISACPTTIAEILNLADKIDREEMRIDEVVDGLIDPNAPAEALAEDVTDEQLEEDLEAETEDDEDGAAVQNASMLKLKADAGQRFAKIHVLYNKMMKALAKNGSRSRPYLKTQEEISAELMLIRFSAKQVEALCDGLRRLVDEVRSYERSIMELCVEKSGMPRSYFIKTFPGNEEDLNWVGREVTGRKPYSEVLARFAPAILEQQQALIDLQKRVGIPVKDLKEINRQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAVKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQATMAPSDAAVYTSLRDATKEVLDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFLDNT*