ggKbase home page

PLM3_127_b2_sep16_scaffold_15942_3

Organism: PLM3_127_b2_sep16_Chloroflexi_Thermoflexia_53_7

near complete RP 50 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(1469..2674)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0K0_CALAS similarity UNIREF
DB: UNIREF100
  • Identity: 56.4
  • Coverage: 374.0
  • Bit_score: 389
  • Evalue 3.00e-105
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 56.4
  • Coverage: 374.0
  • Bit_score: 389
  • Evalue 8.40e-106
Tax=CG_Anaero_02 similarity UNIPROT
DB: UniProtKB
  • Identity: 55.8
  • Coverage: 371.0
  • Bit_score: 389
  • Evalue 3.20e-105

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Anaero_02 → Anaerolineae → Chloroflexi → Bacteria

Sequences

DNA sequence
Length: 1206
ATGGTCGCCAAGTTTAGGAGGAAGGCGTTCAAAATGTTTGCAAATCACACTTCTTACACGAACTCCCCAGGGCGGATTAGTCATCTTTATCAAAATGAGGATCAAGGATTTTTGCATCAGGATCATTTCTTTGATGCTTTTGCGGAAAAAGATGATCCAGAGCAACTTGAAGCTTTCTACTTTGCCCTTGAAGAGGAAGCTATCCACGCCAATCAAGCCACCGATCCTGATGATAAAACTGAAGAAGCTGAGGAACTTTTATTTTATGCGGCTGATGACACGGATACAGATTTTGATGTCGATGACTCAATCGCCCTGTATCTAAAAGAAATCAGCCGCATTCCGCTTTTGAGCGGGGAAGAGGAAGTTAAGCTAGCCAAGGCGATTGAACGAGGCAAAAAAGCGATGGTGCGTTTGGCTCAGGCGCAAGCGCGGGCTAATGGCCTTTCCCGTGACCGTTTGCGCAGCGAAGTTCGGCGTGGCAAGGAAGCTCGCCGCAAGCTCATCGAAGCCAACTTTAGGCTGGTGATCAGCATTGCCAAAAAATACATCGGGCACGGTGTTTCTTTTATGGATTTAATCCAGGAAGGCAACATTGGCCTGATCCGCGCCGTCGAGAAGTTTGAATACCAACGGGGTTTCAAATTCAGCACTTACGCCACCTGGTGGATTCGCCAGGCCGTGAGCCGAGCCTTGTCAGACCAGGGTCGAACTATCCGCGTGCCGGTGCATATGGGTGAACGCATCACCCAACTTTCCCGCGTCTCCCGCGAATTAGTCCAGAAAAATGGACACGAGCCGACTGAGGAAGAAATCGCCGCCGAAATGGGCATCAGTGTGCGTTTGTTGGAGCGCATCCGCCAGGCTGCCCAATACCCTCTTTCCCTGGAAATGGAAGTGGGCGAAGATATGGACAGCACCCTGGGCGACTTTATTGAAGATGACAACAATTTGTTGCCCAATGACTCGGCCATTCATAAATTACTGTGCGAGCGAGTTAATGATGTTTTAGCCTCACTCAGCGCGCGGGAGAGCCGGGTGTTGCAATTGCGTTTTGGTTTGCAAGATGGCCGGGCTTACACCCTGGAAGAAGTGGGACAGAAATTTGGAGTAACGCGGGAGCGCATCCGCCAAATTGAAGCCAAAGCCCTGAGCAAGTTACGCCATCCCCGCCGCAGCCGGCGCTTGCGCGACTTTTTGGAGTAA
PROTEIN sequence
Length: 402
MVAKFRRKAFKMFANHTSYTNSPGRISHLYQNEDQGFLHQDHFFDAFAEKDDPEQLEAFYFALEEEAIHANQATDPDDKTEEAEELLFYAADDTDTDFDVDDSIALYLKEISRIPLLSGEEEVKLAKAIERGKKAMVRLAQAQARANGLSRDRLRSEVRRGKEARRKLIEANFRLVISIAKKYIGHGVSFMDLIQEGNIGLIRAVEKFEYQRGFKFSTYATWWIRQAVSRALSDQGRTIRVPVHMGERITQLSRVSRELVQKNGHEPTEEEIAAEMGISVRLLERIRQAAQYPLSLEMEVGEDMDSTLGDFIEDDNNLLPNDSAIHKLLCERVNDVLASLSARESRVLQLRFGLQDGRAYTLEEVGQKFGVTRERIRQIEAKALSKLRHPRRSRRLRDFLE*